Genomic prediction in maize breeding populations with genotyping-by-sequencing (Q37272913)

19 August 2017

Genomic prediction in maize breeding populations with genotyping-by-sequencing (English)

1 reference

19 August 2017

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10

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19 August 2017

Paulino Pérez-Rodríguez

Paulino Pérez

4

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Juan Burgueño

Juan Burgueño

8

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José Crossa

José Crossa

1

0 references

Jean-Luc Jannink

11

Jean-Luc Jannink

1 reference

19 August 2017

Yoseph Beyene

2

1 reference

19 August 2017

Semagn Kassa

3

1 reference

19 August 2017

John M Hickey

5

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19 August 2017

Charles Chen

6

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19 August 2017

Gustavo de los Campos

7

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19 August 2017

Vanessa S Windhausen

9

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19 August 2017

Marco A Lopez Cruz

12

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19 August 2017

Raman Babu

13

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19 August 2017

6 November 2013

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19 August 2017

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19 August 2017

3

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19 August 2017

11

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19 August 2017

1903-1926

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Comprehensive genotyping of the USA national maize inbred seed bank.

19 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815055

Genomic prediction in CIMMYT maize and wheat breeding programs

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815055

Marker density and read depth for genotyping populations using genotyping-by-sequencing

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815055

Inferences from genomic models in stratified populations

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815055

Whole-genome regression and prediction methods applied to plant and animal breeding

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815055

Maize HapMap2 identifies extant variation from a genome in flux.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815055

Genome-enabled prediction of genetic values using radial basis function neural networks

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815055

Predicting complex quantitative traits with Bayesian neural networks: a case study with Jersey cows and wheat

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815055

Comparative SNP and haplotype analysis reveals a higher genetic diversity and rapider LD decay in tropical than temperate germplasm in maize

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815055

Accuracy of genomic selection in simulated populations mimicking the extent of linkage disequilibrium in beef cattle

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815055

SNVer: a statistical tool for variant calling in analysis of pooled or individual next-generation sequencing data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815055

A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815055

Genomic-Enabled Prediction Based on Molecular Markers and Pedigree Using the Bayesian Linear Regression Package in R.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815055

Predictive ability of subsets of single nucleotide polymorphisms with and without parent average in US Holsteins

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815055

Prediction of genetic values of quantitative traits in plant breeding using pedigree and molecular markers.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815055

Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815055

The Sequence Alignment/Map format and SAMtools

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815055

Fast and accurate short read alignment with Burrows-Wheeler transform

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815055

Factors affecting accuracy from genomic selection in populations derived from multiple inbred lines: a Barley case study

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815055

Predicting quantitative traits with regression models for dense molecular markers and pedigree

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815055

BioJava: an open-source framework for bioinformatics

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815055

TASSEL: software for association mapping of complex traits in diverse samples

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815055

Genomic-assisted prediction of genetic value with semiparametric procedures

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815055

Intraspecific violation of genetic colinearity and its implications in maize

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815055

Prediction of total genetic value using genome-wide dense marker maps

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815055

Rare genetic variation at Zea mays crtRB1 increases beta-carotene in maize grain

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815055

Comparison between linear and non-parametric regression models for genome-enabled prediction in wheat

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815055

Effectiveness of genomic prediction of maize hybrid performance in different breeding populations and environments

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815055

Semi-parametric genomic-enabled prediction of genetic values using reproducing kernel Hilbert spaces methods.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815055

Efficient methods to compute genomic predictions

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815055

3 September 2018

Identifiers

DOI

10.1534/G3.113.008227

1 reference

19 August 2017

1 reference

19 August 2017

1 reference