Nucleotide composition-linked divergence of vertebrate core promoter architecture. (Q34605608)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21284373%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

title

Nucleotide composition-linked divergence of vertebrate core promoter architecture (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21284373%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

author

Simon J van Heeringen

1

1 reference

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21 January 2020

Gert Jan C Veenstra

6

1 reference

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21 January 2020

author name string

Waseem Akhtar

2

1 reference

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21 January 2020

Ulrike G Jacobi

3

1 reference

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21 January 2020

Robert C Akkers

4

1 reference

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21 January 2020

Yutaka Suzuki

5

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21 January 2020

publication date

10 January 2011

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21 January 2020

1 reference

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21 January 2020

volume

21

1 reference

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21 January 2020

issue

3

1 reference

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21 January 2020

page(s)

410-421

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Regulated post-transcriptional RNA cleavage diversifies the eukaryotic transcriptome

21 January 2020

cites work

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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A short ultraconserved sequence drives transcription from an alternate FBN1 promoter

7 July 2018

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7 July 2018

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Analysis of overrepresented motifs in human core promoters reveals dual regulatory roles of YY1

7 July 2018

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Mammalian RNA polymerase II core promoters: insights from genome-wide studies

7 July 2018

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7 July 2018

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Position and distance specificity are important determinants of cis-regulatory motifs in addition to evolutionary conservation

7 July 2018

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DNA familial binding profiles made easy: comparison of various motif alignment and clustering strategies

7 July 2018

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Identification of novel functional TBP-binding sites and general factor repertoires

7 July 2018

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hDREF regulates cell proliferation and expression of ribosomal protein genes

7 July 2018

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The new core promoter element XCPE1 (X Core Promoter Element 1) directs activator-, mediator-, and TATA-binding protein-dependent but TFIID-independent RNA polymerase II transcription from TATA-less promoters

7 July 2018

1 reference

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Perspectives on the RNA polymerase II core promoter.

7 July 2018

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Comparative genomics of Drosophila and human core promoters

7 July 2018

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The features of Drosophila core promoters revealed by statistical analysis

7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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Sp1-like transcription factors are regulators of embryonic development in vertebrates

7 July 2018

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7 July 2018

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7 July 2018

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Specialized and redundant roles of TBP and a vertebrate-specific TBP paralog in embryonic gene regulation in Xenopus

7 July 2018

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7 July 2018

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The MTE, a new core promoter element for transcription by RNA polymerase II.

7 July 2018

1 reference

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Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes

7 July 2018

1 reference

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7 July 2018

1 reference

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Cbf1p is required for chromatin remodeling at promoter-proximal CACGTG motifs in yeast.

7 July 2018

1 reference

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Ets ternary complex transcription factors

7 July 2018

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The RNA polymerase II core promoter

7 July 2018

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Computational analysis of core promoters in the Drosophila genome

7 July 2018

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The DPE, a core promoter element for transcription by RNA polymerase II.

7 July 2018

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7 July 2018

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Nuclear activators and coactivators in mammalian mitochondrial biogenesis

7 July 2018

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Recruitment of an RNA polymerase II complex is mediated by the constitutive activation domain in CREB, independently of CREB phosphorylation

7 July 2018

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New core promoter element in RNA polymerase II-dependent transcription: sequence-specific DNA binding by transcription factor IIB

7 July 2018

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A glutamine-rich hydrophobic patch in transcription factor Sp1 contacts the dTAFII110 component of the Drosophila TFIID complex and mediates transcriptional activation

7 July 2018

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Species-specific interaction of the glutamine-rich activation domains of Sp1 with the TATA box-binding protein

7 July 2018

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Sp1 elements protect a CpG island from de novo methylation

7 July 2018

1 reference

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Sp1 sites in the mouse aprt gene promoter are required to prevent methylation of the CpG island

7 July 2018

1 reference

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Direct recognition of initiator elements by a component of the transcription factor IID complex

7 July 2018

1 reference

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Cloning of an intrinsic human TFIID subunit that interacts with multiple transcriptional activators

7 July 2018

1 reference

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Specific in vitro transcription of conalbumin gene is drastically decreased by single-point mutation in T-A-T-A box homology sequence

7 July 2018

1 reference

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The SV40 early region TATA box is required for accurate in vitro initiation of transcription

7 July 2018

1 reference

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CpG islands in vertebrate genomes

7 July 2018

1 reference

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The "initiator" as a transcription control element

7 July 2018

1 reference

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Sequence logos: a new way to display consensus sequences

7 July 2018

1 reference

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MotifVoter: a novel ensemble method for fine-grained integration of generic motif finders.

7 July 2018

1 reference

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NCBI GEO standards and services for microarray data.

26 October 2018

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Constrained binding site diversity within families of transcription factors enhances pattern discovery bioinformatics

26 October 2018

1 reference

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A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling.

26 October 2018

1 reference

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Drosophila TFIID binds to a conserved downstream basal promoter element that is present in many TATA-box-deficient promoters

26 October 2018

1 reference

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Core promoter elements recognized by transcription factor IIB

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21284373

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A common cis-element in promoters of protein synthesis and cell cycle genes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21284373

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.111724.110

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21284373%20AND%20SRC:MED&resulttype=core&format=json

release_wuio33lrq5bklgsjen7snkxpju

21 January 2020

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/wuio33lrq5bklgsjen7snkxpju

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21284373%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

PubMed publication ID

21284373

1 reference