Populations of the three major backbone conformations in 19 amino acid dipeptides. (Q34550065)

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19 January 2020

title

Populations of the three major backbone conformations in 19 amino acid dipeptides (English)

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19 January 2020

author

Vlasta Mohaček-Grošev

2

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19 January 2020

author name string

Joze Grdadolnik

1

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19 January 2020

Robert L Baldwin

3

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19 January 2020

Franc Avbelj

4

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19 January 2020

language of work or name

English

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publication date

4 January 2011

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Proceedings of the National Academy of Sciences of the United States of America

19 January 2020

published in

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19 January 2020

volume

108

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19 January 2020

issue

5

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19 January 2020

page(s)

1794-1798

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Intrinsic propensities of amino acid residues in GxG peptides inferred from amide I' band profiles and NMR scalar coupling constants

19 January 2020

cites work

1 reference

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Distribution of conformations sampled by the central amino acid residue in tripeptides inferred from amide I band profiles and NMR scalar coupling constants

7 July 2018

1 reference

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Structures, basins, and energies: a deconstruction of the Protein Coil Library.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033284

Determination of conformational preferences of dipeptides using vibrational spectroscopy.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033284

Intrinsic backbone preferences are fully present in blocked amino acids

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033284

Neighbor effect on PPII conformation in alanine peptides

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033284

Helix, sheet, and polyproline II frequencies and strong nearest neighbor effects in a restricted coil library

7 July 2018

1 reference

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The Protein Coil Library: a structural database of nonhelix, nonstrand fragments derived from the PDB.

7 July 2018

1 reference

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Origin of the neighboring residue effect on peptide backbone conformation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033284

Role of backbone solvation and electrostatics in generating preferred peptide backbone conformations: Distributions of phi

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033284

Structure validation by Calpha geometry: phi,psi and Cbeta deviation

7 July 2018

1 reference

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Polyproline II structure in a sequence of seven alanine residues.

7 July 2018

1 reference

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Local interactions in peptides. 1H-1H, 13C-H coupling constants and calculations for the conformational analysis of N-acetyl-N'-methylamides of aliphatic amino acids.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033284

Comparison of a QM/MM force field and molecular mechanics force fields in simulations of alanine and glycine "dipeptides" (Ace-Ala-Nme and Ace-Gly-Nme) in water in relation to the problem of modeling the unfolded peptide backbone in solution

7 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1017317108

Vibrational Raman optical activity characterization of poly(l-proline) II helix in alanine oligopeptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1017317108

Temperature and pressure effects on conformational equilibria of alanine dipeptide in aqueous solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1017317108

Peptide secondary structure folding reaction coordinate: correlation between uv raman amide III frequency, Psi Ramachandran angle, and hydrogen bonding.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033284

The effects of guanidine hydrochloride on the 'random coil' conformations and NMR chemical shifts of the peptide series GGXGG

27 October 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1017317108

NMR analysis of main-chain conformational preferences in an unfolded fibronectin-binding protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1017317108

21 January 2018

Identifiers

DOI

10.1073/PNAS.1017317108

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19 January 2020

0 references

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19 January 2020

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