Intrinsic backbone preferences are fully present in blocked amino acids (Q31030110)

13 October 2017

Intrinsic backbone preferences are fully present in blocked amino acids (English)

1 reference

13 October 2017

Franc Avbelj

1

1 reference

13 October 2017

Simona Golic Grdadolnik

series ordinal

2

1 reference

13 October 2017

Joze Grdadolnik

series ordinal

3

1 reference

13 October 2017

Robert L Baldwin

series ordinal

4

1 reference

13 October 2017

language of work or name

English

0 references

publication date

19 January 2006

1 reference

Proceedings of the National Academy of Sciences of the United States of America

13 October 2017

1 reference

13 October 2017

103

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13 October 2017

5

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13 October 2017

1272-1277

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Hydrogen-bonded turns in proteins: the case for a recount

13 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1360578

Sterics and solvation winnow accessible conformational space for unfolded proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1360578

The polyproline II conformation in short alanine peptides is noncooperative

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1360578

Origin of the neighboring residue effect on peptide backbone conformation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1360578

Extending the treatment of backbone energetics in protein force fields: limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1360578

Boltzmann-type distribution of side-chain conformation in proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1360578

The pentapeptide GGAGG has PII conformation.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1360578

Role of backbone solvation and electrostatics in generating preferred peptide backbone conformations: Distributions of phi

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1360578

Is polyproline II a major backbone conformation in unfolded proteins?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1360578

Polyproline II structure in a sequence of seven alanine residues.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1360578

Role of backbone solvation in determining thermodynamic beta propensities of the amino acids

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1360578

Composites of local structure propensities: evidence for local encoding of long-range structure

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1360578

Random coil chemical shifts in acidic 8 M urea: implementation of random coil shift data in NMRView

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1360578

Energetics of the interaction between water and the helical peptide group and its role in determining helix propensities

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1360578

A physical basis for protein secondary structure

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1360578

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1360578

Stability of alpha-helices

21 June 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1360578

21 June 2018

https://api.crossref.org/works/10.1073%2FPNAS.0510420103

Comparison between the phi distribution of the amino acids in the protein database and NMR data indicates that amino acids have various phi propensities in the random coil conformation

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1360578

21 June 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1360578

21 June 2018

https://api.crossref.org/works/10.1073%2FPNAS.0510420103

Amino-aromatic interactions in proteins

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1360578

Intrinsic phi, psi propensities of amino acids, derived from the coil regions of known structures

21 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510420103

Analysis of main chain torsion angles in proteins: prediction of NMR coupling constants for native and random coil conformations

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510420103

Relationships between amino acid sequence and backbone torsion angle preferences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510420103

Assessing the reliability of density functional methods in the conformational study of polypeptides: the treatment of intraresidue nonbonding interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510420103

Solvation effects on alanine dipeptide: A MP2/cc-pVTZ//MP2/6-31G** study of (Phi, Psi) energy maps and conformers in the gas phase, ether, and water

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510420103

Comparison of a QM/MM force field and molecular mechanics force fields in simulations of alanine and glycine "dipeptides" (Ace-Ala-Nme and Ace-Gly-Nme) in water in relation to the problem of modeling the unfolded peptide backbone in solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510420103

Contact Electron‐Spin Coupling of Nuclear Magnetic Moments

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510420103

NMR analysis of main-chain conformational preferences in an unfolded fibronectin-binding protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510420103

The effects of guanidine hydrochloride on the 'random coil' conformations and NMR chemical shifts of the peptide series GGXGG

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510420103

Amino acid conformational preferences and solvation of polar backbone atoms in peptides and proteins

21 January 2018

1 reference

12 December 2020

Rotatory properties of molecules containing two peptide groups: experimental and theoretical results

1 reference

12 December 2020

A consistent set of statistical potentials for quantifying local side-chain and backbone interactions

1 reference

12 December 2020

Intrinsic Dissociation Constants of Aspartyl and Glutamyl Carboxyl Groups

1 reference

12 December 2020

The physical properties of local interactions of tyrosine residues in peptides and unfolded proteins

1 reference

12 December 2020

Role of electrostatic screening in determining protein main chain conformational preferences

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0510420103

1 reference

13 October 2017

0 references

1 reference

13 October 2017

1 reference