Transcriptome analysis of rice root heterosis by RNA-Seq (Q34549898)

3 August 2017

Transcriptome analysis of rice root heterosis by RNA-Seq (English)

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3 August 2017

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Rongrong Zhai

1

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3 August 2017

Yue Feng

2

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3 August 2017

Huimin Wang

3

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3 August 2017

Xiaodeng Zhan

4

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3 August 2017

Xihong Shen

5

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3 August 2017

Weiming Wu

6

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3 August 2017

Yingxin Zhang

7

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3 August 2017

Daibo Chen

8

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3 August 2017

Gaoxing Dai

9

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3 August 2017

Zhanlie Yang

10

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3 August 2017

Liyong Cao

11

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3 August 2017

Shihua Cheng

12

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3 August 2017

language of work or name

English

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publication date

16 January 2013

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3 August 2017

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3 August 2017

14

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3 August 2017

19

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describes a project that uses

3 August 2017

edgeR

object named as

edgeR

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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Heterosis of Arabidopsis hybrids between C24 and Col is associated with increased photosynthesis capacity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

Characterization of genes involved in cytokinin signaling and metabolism from rice

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

Transcriptome analysis of rice mature root tissue and root tips in early development by massive parallel sequencing.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

OsGLU3, a putative membrane-bound endo-1,4-beta-glucanase, is required for root cell elongation and division in rice (Oryza sativa L.).

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

Identification and characterization of the duplicate rice sucrose synthase genes OsSUS5 and OsSUS7 which are associated with the plasma membrane

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

Genome-wide temporal-spatial gene expression profiling of drought responsiveness in rice

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

Massive parallel sequencing of mRNA in identification of unannotated salinity stress-inducible transcripts in rice (Oryza sativa L.).

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

Comparative transcriptional profiling and preliminary study on heterosis mechanism of super-hybrid rice

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

Global epigenetic and transcriptional trends among two rice subspecies and their reciprocal hybrids

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

The abscisic acid receptor PYR1 in complex with abscisic acid

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

Correlation between parental transcriptome and field data for the characterization of heterosis in Zea mays L.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

Modulation of drought resistance by the abscisic acid receptor PYL5 through inhibition of clade A PP2Cs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

Molecular dissection of heterosis manifestation during early maize root development

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

Global analysis of allele-specific expression in Arabidopsis thaliana

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

A transcriptomic analysis of superhybrid rice LYP9 and its parents

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

RNA-Seq: a revolutionary tool for transcriptomics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

Transcriptomic profiling of mature embryo from an elite super-hybrid rice LYP9 and its parental lines

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

Mapping and quantifying mammalian transcriptomes by RNA-Seq

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

Degeneration, Albinism and Inbreeding

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

Towards the molecular basis of heterosis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

Progress in research and development on hybrid rice: a super-domesticate in China

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

Allelic variation and heterosis in maize: how do two halves make more than a whole?

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

Plant cell wall biosynthesis: genetic, biochemical and functional genomics approaches to the identification of key genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

Heterosis in root development and differential gene expression between hybrids and their parental inbreds in wheat (Triticum aestivum L.).

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

WEGO: a web tool for plotting GO annotations

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

Transcription profile analyses identify genes and pathways central to root cap functions in maize

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

Genomewide nonadditive gene regulation in Arabidopsis allotetraploids

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

Identification of differentially expressed genes in leaf and root between wheat hybrid and its parental inbreds using PCR-based cDNA subtraction

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

Genetic analysis of variation in gene expression in Arabidopsis thaliana

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

Serial analysis of gene expression study of a hybrid rice strain (LYP9) and its parental cultivars

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

Toward a systems approach to understanding plant cell walls

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

An abscisic acid-sensitive checkpoint in lateral root development of Arabidopsis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

AtCSLD3, a cellulose synthase-like gene important for root hair growth in arabidopsis.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

Cluster analysis and display of genome-wide expression patterns

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

Dual response regulators (NarL and NarP) interact with dual sensors (NarX and NarQ) to control nitrate- and nitrite-regulated gene expression in Escherichia coli K-12

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

Use of a controlled-nutrient experiment to test heterosis hypotheses

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

A yeast hybrid provides insight into the evolution of gene expression regulation.

7 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-19

Heterosis of biomass production in Arabidopsis. Establishment during early development.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-19

A genome-wide transcription analysis reveals a close correlation of promoter INDEL polymorphism and heterotic gene expression in rice hybrids.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-19

Growth of the maize primary root at low water potentials : I. Spatial distribution of expansive growth

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-19

Characterization of fructose-bisphosphate aldolase regulated by gibberellin in roots of rice seedling

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-19

Differences in the Anaerobic Lactate-Succinate Production and in the Changes of Cell Sap pH for Plants with High and Low Resistance to Anoxia.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-19

OsCSLD1, a cellulose synthase-like D1 gene, is required for root hair morphogenesis in rice.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-19

Cytokinin-mediated cell cycling arrest of pericycle founder cells in lateral root initiation of Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-19

Cytokinin regulates type-A Arabidopsis Response Regulator activity and protein stability via two-component phosphorelay.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-19

Downregulation of OsPK1, a cytosolic pyruvate kinase, by T-DNA insertion causes dwarfism and panicle enclosure in rice

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

Phosphorylation of Arabidopsis response regulator 7 (ARR7) at the putative phospho-accepting site is required for ARR7 to act as a negative regulator of cytokinin signaling

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

Manifestation of heterosis during early maize (Zea mays L.) root development

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3556317

Induction of Lactate Dehydrogenase Isozymes by Oxygen Deficit in Barley Root Tissue

27 October 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-19

Phosphotransfer between CheA, CheY1, and CheY2 in the chemotaxis signal transduction chain of Rhizobium meliloti

21 January 2018

1 reference

12 December 2020

THE MENDELIAN THEORY OF HEREDITY AND THE AUGMENTATION OF VIGOR

1 reference

12 December 2020

Growth, Water Relations, and Accumulation of Organic and Inorganic Solutes in Roots of Maize Seedlings during Salt Stress

1 reference

12 December 2020

The response regulators CheB and CheY exhibit competitive binding to the kinase CheA

1 reference

12 December 2020

Multiple type-B response regulators mediate cytokinin signal transduction in Arabidopsis

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2164-14-19

1 reference

3 August 2017

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3 August 2017

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