Spreading of heterochromatin is limited to specific families of maize retrotransposons (Q34524725)

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21 February 2020

title

Spreading of heterochromatin is limited to specific families of maize retrotransposons (English)

1 reference

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21 February 2020

0 references

10

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21 February 2020

Steven Eichten

1

1 reference

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21 February 2020

Nathanael A Ellis

2

1 reference

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21 February 2020

Cheng-Ting Yeh

4

1 reference

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21 February 2020

Patrick S Schnable

9

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21 February 2020

12

Nathan M Springer

1 reference

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21 February 2020

11

R Kelly Dawe

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21 February 2020

3

Irina Makarevitch

1 reference

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21 February 2020

author name string

Jonathan I Gent

5

1 reference

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21 February 2020

Lin Guo

6

1 reference

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21 February 2020

Karen M McGinnis

7

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21 February 2020

Xiaoyu Zhang

8

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21 February 2020

publication date

13 December 2012

1 reference

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21 February 2020

1 reference

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21 February 2020

volume

8

1 reference

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21 February 2020

issue

12

1 reference

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21 February 2020

page(s)

e1003127

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Creative Commons Attribution 4.0 International

21 February 2020

copyright license

start time

13 December 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

limma

object named as

limma

2 references

22 June 2022

https://europepmc.org/article/PMC/3521669

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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Heritable epigenetic variation among maize inbreds

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7 July 2018

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Retrotransposon-induced heterochromatin spreading in the mouse revealed by insertional polymorphisms

7 July 2018

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Dynamic interactions between transposable elements and their hosts

7 July 2018

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7 July 2018

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Genome-wide evidence for local DNA methylation spreading from small RNA-targeted sequences in Arabidopsis

7 July 2018

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Transposable element origins of epigenetic gene regulation

7 July 2018

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Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata

7 July 2018

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A brief history of the status of transposable elements: from junk DNA to major players in evolution

7 July 2018

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Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor

7 July 2018

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Transcriptional activity of transposable elements in maize

7 July 2018

1 reference

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

7 July 2018

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BS Seeker: precise mapping for bisulfite sequencing

7 July 2018

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BEDTools: a flexible suite of utilities for comparing genomic features

7 July 2018

1 reference

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The B73 Maize Genome: Complexity, Diversity, and Dynamics

7 July 2018

1 reference

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Loss of RNA-dependent RNA polymerase 2 (RDR2) function causes widespread and unexpected changes in the expression of transposons, genes, and 24-nt small RNAs

7 July 2018

1 reference

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Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome

7 July 2018

1 reference

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The polychromatic Helitron landscape of the maize genome

7 July 2018

1 reference

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A transposon-induced epigenetic change leads to sex determination in melon

7 July 2018

1 reference

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Human DNA methylomes at base resolution show widespread epigenomic differences

7 July 2018

1 reference

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Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression

7 July 2018

1 reference

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The effect of transposable element insertions on gene expression evolution in rodents

7 July 2018

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Epigenetic regulation of transposable elements in plants

7 July 2018

1 reference

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Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana

7 July 2018

1 reference

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Transposable elements and the evolution of regulatory networks

7 July 2018

1 reference

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Epigenetic interactions between transposons and genes: lessons from plants

7 July 2018

1 reference

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Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

7 July 2018

1 reference

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A unified classification system for eukaryotic transposable elements

7 July 2018

1 reference

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Global gene expression analysis of the shoot apical meristem of maize (Zea mays L.).

7 July 2018

1 reference

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Natural variation for alleles under epigenetic control by the maize chromomethylase zmet2.

7 July 2018

1 reference

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Heritable epigenetic mutation of a transposon-flanked Arabidopsis gene due to lack of the chromatin-remodeling factor DDM1.

7 July 2018

1 reference

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Remarkable variation in maize genome structure inferred from haplotype diversity at the bz locus

7 July 2018

1 reference

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Genetics: Junk DNA as an evolutionary force

7 July 2018

1 reference

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An RNA-dependent RNA polymerase is required for paramutation in maize

7 July 2018

1 reference

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Inherited epigenetic variation--revisiting soft inheritance

7 July 2018

1 reference

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Gene enrichment in maize with hypomethylated partial restriction (HMPR) libraries

7 July 2018

1 reference

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The significance of responses of the genome to challenge

7 July 2018

1 reference

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Evolution of DNA sequence nonhomologies among maize inbreds

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3521669

siRNAs targeting an intronic transposon in the regulation of natural flowering behavior in Arabidopsis

7 July 2018

1 reference

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Role of transposable elements in heterochromatin and epigenetic control

7 July 2018

1 reference

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Enrichment of gene-coding sequences in maize by genome filtration

7 July 2018

1 reference

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Maize genome sequencing by methylation filtration

7 July 2018

1 reference

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Transgenerational epigenetic inheritance

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3521669

Intraspecific violation of genetic colinearity and its implications in maize

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3521669

A mutation that prevents paramutation in maize also reverses Mutator transposon methylation and silencing

7 July 2018

1 reference

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BLAT—The BLAST-Like Alignment Tool

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3521669

Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3521669

Maize chromomethylase Zea methyltransferase2 is required for CpNpG methylation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3521669

Regulatory changes as a consequence of transposon insertion

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3521669

Epigenetic inheritance at the agouti locus in the mouse

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3521669

Differential methylation of genes and retrotransposons facilitates shotgun sequencing of the maize genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3521669

Genetic and molecular analysis of the gypsy chromatin insulator of Drosophila

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3521669

Differential expression of a new dominant agouti allele (Aiapy) is correlated with methylation state and is influenced by parental lineage

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3521669

Somatically heritable switches in the DNA modification of Mu transposable elements monitored with a suppressible mutant in maize

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3521669

From controlling elements to transposons: Barbara McClintock and the Nobel Prize.

7 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003127

The late flowering phenotype of fwa mutants is caused by gain-of-function epigenetic alleles of a homeodomain gene.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003127

mediator of paramutation1 is required for establishment and maintenance of paramutation at multiple maize loci.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003127

Control of genic DNA methylation by a jmjC domain-containing protein in Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003127

Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23271981

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Active maize genes are unmodified and flanked by diverse classes of modified, highly repetitive DNA

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23271981

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PGEN.1003127

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23271981%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23271981%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23271981%20AND%20SRC:MED&resulttype=core&format=json