Dereplicating nonribosomal peptides using an informatic search algorithm for natural products (iSNAP) discovery. (Q34468738)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23132949%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

title

Dereplicating nonribosomal peptides using an informatic search algorithm for natural products (iSNAP) discovery (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23132949%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

1 reference

1

1 reference

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17 February 2020

Xiaowen Liu

4

1 reference

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17 February 2020

6

Nathan A Magarvey

1 reference

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17 February 2020

author name string

Lian Yang

2

1 reference

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17 February 2020

Chad Johnston

3

1 reference

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17 February 2020

Bin Ma

5

1 reference

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17 February 2020

language of work or name

English

0 references

publication date

6 November 2012

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23132949%20AND%20SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

17 February 2020

number of pages

6

1 reference

based on heuristic

inferred from page(s)

published in

1 reference

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17 February 2020

volume

109

1 reference

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17 February 2020

issue

47

1 reference

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17 February 2020

page(s)

19196-19201

1 reference

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An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

17 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3511102

PEAKS DB: De Novo Sequencing Assisted Database Search for Sensitive and Accurate Peptide Identification

6 July 2018

1 reference

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A mass spectrometry-guided genome mining approach for natural product peptidogenomics

6 July 2018

1 reference

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Sequencing cyclic peptides by multistage mass spectrometry

6 July 2018

1 reference

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New natural product biosynthetic chemistry discovered by genome mining

6 July 2018

1 reference

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Dereplication and de novo sequencing of nonribosomal peptides

6 July 2018

1 reference

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Drug discovery and natural products: end of an era or an endless frontier?

6 July 2018

1 reference

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Interpretation of tandem mass spectra obtained from cyclic nonribosomal peptides

6 July 2018

1 reference

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Advances in the understanding and use of the genomic base of microbial secondary metabolite biosynthesis for the discovery of new natural products

6 July 2018

1 reference

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Sequence-scrambling fragmentation pathways of protonated peptides

6 July 2018

1 reference

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NORINE: a database of nonribosomal peptides

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3511102

Assembly-line enzymology for polyketide and nonribosomal Peptide antibiotics: logic, machinery, and mechanisms.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3511102

Biosynthesis of nonribosomal peptides1.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3511102

Fragmentation pathways of protonated peptides

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3511102

Evaluation of algorithms for protein identification from sequence databases using mass spectrometry data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3511102

Nonribosomal peptides: from genes to products

6 July 2018

1 reference

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Mass spectrometric fragmentation of cyclic peptides belonging to the polymyxin and colistin antibiotics studied by ion trap and quadrupole/orthogonal-acceleration time-of-flight technology

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3511102

Probability-based protein identification by searching sequence databases using mass spectrometry data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3511102

Kutznerides 1-4, depsipeptides from the actinomycete Kutzneria sp. 744 inhabiting mycorrhizal roots of Picea abies seedlings

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3511102

A computational method for assessing peptide- identification reliability in tandem mass spectrometry analysis with SEQUEST.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3511102

Scrambling of sequence information in collision-induced dissociation of peptides

27 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23132949

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12 December 2020

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Identifiers

DOI

10.1073/PNAS.1206376109

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17 February 2020

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24 November 2022

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23132949%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

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