A mass spectrometry-guided genome mining approach for natural product peptidogenomics (Q35672338)

9 August 2017

A mass spectrometry-guided genome mining approach for natural product peptidogenomics (English)

1 reference

9 August 2017

1 reference

Michael A Fischbach

7

0 references

Bradley S. Moore

object named as

Bradley S Moore

8

0 references

Pieter C. Dorrestein

9

object named as

Pieter C Dorrestein

1 reference

9 August 2017

1

Roland D Kersten

1 reference

9 August 2017

6

William Fenical

1 reference

9 August 2017

Yu-Liang Yang

2

1 reference

9 August 2017

Yuquan Xu

3

1 reference

9 August 2017

Peter Cimermancic

4

1 reference

9 August 2017

Sang-Jip Nam

5

1 reference

9 August 2017

9 October 2011

1 reference

9 August 2017

Nature Chemical Biology

1 reference

9 August 2017

7

1 reference

9 August 2017

11

1 reference

9 August 2017

794-802

1 reference

https://scigraph.springernature.com/pub.10.1038/nchembio.684

9 August 2017

0 references

cites work

Imaging mass spectrometry and genome mining via short sequence tagging identified the anti-infective agent arylomycin in Streptomyces roseosporus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

NRPSpredictor2--a web server for predicting NRPS adenylation domain specificity

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

Diversity of nonribosomal peptide synthetases involved in the biosynthesis of lipopeptide biosurfactants

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

Genomics-inspired discovery of natural products

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

Genome mining for ribosomally synthesized natural products

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

Genome mining and genetic analysis of cypemycin biosynthesis reveal an unusual class of posttranslationally modified peptides

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

Diversity of monomers in nonribosomal peptides: towards the prediction of origin and biological activity.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

Catalytic promiscuity in the biosynthesis of cyclic peptide secondary metabolites in planktonic marine cyanobacteria

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

Missing genes in the annotation of prokaryotic genomes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

Challenges in mass spectrometry based targeted metabolomics

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

Recent advances in thiopeptide antibiotic biosynthesis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

Follow the leader: the use of leader peptides to guide natural product biosynthesis.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

The Pfam protein families database

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

Translating metabolic exchange with imaging mass spectrometry

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

Genomic basis for natural product biosynthetic diversity in the actinomycetes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

Ribosomal peptide natural products: bridging the ribosomal and nonribosomal worlds

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

Dereplication and de novo sequencing of nonribosomal peptides

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

Automated genome mining for natural products.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

The structural diversity of acidic lipopeptide antibiotics

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

How nature morphs peptide scaffolds into antibiotics

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

InterPro: the integrative protein signature database

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

A global assembly line for cyanobactins

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

Genome sequence of the streptomycin-producing microorganism Streptomyces griseus IFO 13350

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

Duplication and segregation of the actin (MreB) cytoskeleton during the prokaryotic cell cycle

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

Polyketide synthases and nonribosomal peptide synthetases: the emerging view from bacterial genomics

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

Structural and functional diversity of microcins, gene-encoded antibacterial peptides from enterobacteria

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

Two enzymes catalyze the maturation of a lasso peptide in Escherichia coli

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

Lantibiotics: peptides of diverse structure and function.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

Pyoverdine siderophores: from biogenesis to biosignificance

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

Morphogenetic surfactants and their role in the formation of aerial hyphae in Streptomyces coelicolor.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

Identification of post-translational modifications by blind search of mass spectra.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

Bacteriocins: developing innate immunity for food

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

Daptomycin biosynthesis in Streptomyces roseosporus: cloning and analysis of the gene cluster and revision of peptide stereochemistry

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

The SapB morphogen is a lantibiotic-like peptide derived from the product of the developmental gene ramS in Streptomyces coelicolor.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

Structure of subtilosin A, a cyclic antimicrobial peptide from Bacillus subtilis with unusual sulfur to alpha-carbon cross-links: formation and reduction of alpha-thio-alpha-amino acid derivatives

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2)

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

AmfS, an extracellular peptidic morphogen in Streptomyces griseus

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

Probability-based protein identification by searching sequence databases using mass spectrometry data

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

Defensins and host defense

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

Multifactorial induction of an orphan PKS-NRPS gene cluster in Aspergillus terreus

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

Chapter 14. Biosynthesis of nonribosomal peptide precursors.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

Extending the biosynthetic repertoire in ribosomal peptide assembly.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

Discovery of a new peptide natural product by Streptomyces coelicolor genome mining

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

IMMUNOLOGY:Enhanced: Defensins and Host Defense

25 September 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.684

The Pfam protein families database

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.684

Predictive, structure-based model of amino acid recognition by nonribosomal peptide synthetase adenylation domains

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258187

Antifungal Lipopeptides fromBacillus amyloliquefaciensStrain BO7

23 October 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.684

The glucagon receptor antagonist BI-32169 constitutes a new class of lasso peptides

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21983601

12 December 2020

inferred from PubMed ID database lookup

The pros and cons of peptide-centric proteomics

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21983601

12 December 2020

inferred from PubMed ID database lookup

Structure of the peptide antibiotic stendomycin

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21983601

12 December 2020

inferred from PubMed ID database lookup

Bioactive Natural Peptides

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.684

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1038/NCHEMBIO.684

1 reference

9 August 2017

1 reference

9 August 2017

1 reference