Interplay between partner and ligand facilitates the folding and binding of an intrinsically disordered protein (Q34442046)

2 August 2017

Interplay between partner and ligand facilitates the folding and binding of an intrinsically disordered protein (English)

1 reference

2 August 2017

0 references

Vladimiras Oleinikovas

object named as

Vladimiras Oleinikovas

2

0 references

Joseph M Rogers

object named as

Joseph M Rogers

1

0 references

David De Sancho

object named as

David De Sancho

5

0 references

author name string

Sarah L Shammas

3

1 reference

2 August 2017

Chi T Wong

4

1 reference

2 August 2017

Christopher M Baker

6

1 reference

2 August 2017

Jane Clarke

7

1 reference

2 August 2017

language of work or name

English

0 references

publication date

13 October 2014

1 reference

Proceedings of the National Academy of Sciences of the United States of America

2 August 2017

6

1 reference

based on heuristic

inferred from page(s)

published in

1 reference

2 August 2017

111

1 reference

2 August 2017

43

1 reference

2 August 2017

15420-15425

1 reference

Allostery within a transcription coactivator is predominantly mediated through dissociation rate constants

2 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Both protein dynamics and ligand concentration can shift the binding mechanism between conformational selection and induced fit

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Coupled folding and binding of the disordered protein PUMA does not require particular residual structure

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Structure of the transition state for the binding of c-Myb and KIX highlights an unexpected order for a disordered system

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

The transition state structure for coupled binding and folding of disordered protein domains

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Folding and binding of an intrinsically disordered protein: fast, but not 'diffusion-limited'.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Slow, reversible, coupled folding and binding of the spectrin tetramerization domain

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Rate constants and mechanisms of intrinsically disordered proteins binding to structured targets

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Dynamics and mechanisms of coupled protein folding and binding reactions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Side-chain interactions form late and cooperatively in the binding reaction between disordered peptides and PDZ domains.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Mapping backbone and side-chain interactions in the transition state of a coupled protein folding and binding reaction

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Evidence that inhibition of BAX activation by BCL-2 involves its tight and preferential interaction with the BH3 domain of BAX

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Conformational selection in the molten globule state of the nuclear coactivator binding domain of CBP

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Induced fit, conformational selection and independent dynamic segments: an extended view of binding events

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Experimental evidence for a frustrated energy landscape in a three-helix-bundle protein family

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

The role of dynamic conformational ensembles in biomolecular recognition

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Direct observation of barrier-limited folding of BBL by single-molecule fluorescence resonance energy transfer

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

The intrinsic dynamics of enzymes plays a dominant role in determining the structural changes induced upon inhibitor binding

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Conformational selection or induced fit: a flux description of reaction mechanism

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Different members of a simple three-helix bundle protein family have very different folding rate constants and fold by different mechanisms

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Biophysical characterization of intrinsically disordered proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Linking folding and binding

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Principal component analysis of native ensembles of biomolecular structures (PCA_NEST): insights into functional dynamics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Use of protein engineering techniques to elucidate protein folding pathways

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

The unfoldomics decade: an update on intrinsically disordered proteins.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Kinetics of folding and binding of an intrinsically disordered protein: the inhibitor of yeast aspartic proteinase YPrA.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Structure of the BH3 domains from the p53-inducible BH3-only proteins Noxa and Puma in complex with Mcl-1

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Recognition dynamics up to microseconds revealed from an RDC-derived ubiquitin ensemble in solution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Characterisation of transition state structures for protein folding using 'high', 'medium' and 'low' {Phi}-values

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Mechanism of coupled folding and binding of an intrinsically disordered protein

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Conformational entropy of alanine versus glycine in protein denatured states

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

BPPred: a Web-based computational tool for predicting biophysical parameters of proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Intrinsically unstructured proteins and their functions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Solution structure of prosurvival Mcl-1 and characterization of its binding by proapoptotic BH3-only ligands.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Relationship of Leffler (Bronsted) alpha values and protein folding Phi values to position of transition-state structures on reaction coordinates

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Phi-value analysis and the nature of protein-folding transition states

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Prediction and Functional Analysis of Native Disorder in Proteins from the Three Kingdoms of Life

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Protein topology determines binding mechanism

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

The origins of asymmetry in the folding transition states of protein L and protein G.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Intrinsic disorder and protein function

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Molecular recognition by induced fit: how fit is the concept?

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Intrinsically disordered protein

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Transition state heterogeneity in GCN4 coiled coil folding studied by using multisite mutations and crosslinking

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Protein-protein recognition: crystal structural analysis of a barnase-barstar complex at 2.0-A resolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

A hot spot of binding energy in a hormone-receptor interface

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Mapping the transition state and pathway of protein folding by protein engineering

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

Genome-wide analysis of the interaction between the endosymbiotic bacterium Wolbachia and its Drosophila host

6 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1409122111

Coupled folding and binding with alpha-helix-forming molecular recognition elements.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1409122111

Molecular Principles of the Interactions of Disordered Proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1409122111

Measurement and analysis of NMR residual dipolar couplings for the study of intrinsically disordered proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1409122111

Remarkably fast coupled folding and binding of the intrinsically disordered transactivation domain of cMyb to CBP KIX.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1409122111

Effect of alanine versus glycine in alpha-helices on protein stability

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1409122111

Energetics of protein-protein interactions: analysis of the barnase-barstar interface by single mutations and double mutant cycles.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1409122111

Protein disorder and the evolution of molecular recognition: theory, predictions and observations.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217413

The Structure of the Transition State for Folding of Chymotrypsin Inhibitor 2 Analysed by Protein Engineering Methods: Evidence for a Nucleation-condensation Mechanism for Protein Folding

27 October 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1409122111

Orderly order in protein intrinsic disorder distribution: disorder in 3500 proteomes from viruses and the three domains of life

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25313042

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Mechanism of assembly of the non-covalent spectrin tetramerization domain from intrinsically disordered partners

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25313042

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1409122111

1 reference

2 August 2017

0 references

1 reference

2 August 2017

1 reference