Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093(T)). (Q34330345)

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English	Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093(T)).	scientific article

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scholarly article

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Europe PubMed Central

1 August 2017

Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093(T)). (English)

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Europe PubMed Central

1 August 2017

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whole genome sequencing

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based on heuristic

inferred from title

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based on heuristic

inferred from title

Scott A. Beatson

3

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Europe PubMed Central

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21

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Europe PubMed Central

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Nikos C. Kyrpides

23

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Europe PubMed Central

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24

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Europe PubMed Central

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Natalia N. Ivanova

25

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5

object named as

Alla Lapidus

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Hans-Peter Klenk

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object named as

Hans-Peter Klenk

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Tijana Glavina Del Rio

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object named as

Tijana Glavina Del Rio

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17

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Roxanne Tapia

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27

object named as

Tanja Woyke

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object named as

Ulrike Kappler

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12

object named as

Sam Pitluck

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Europe PubMed Central

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14

object named as

David Bruce

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Europe PubMed Central

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16

object named as

Cliff Han

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22

object named as

Loren Hauser

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Europe PubMed Central

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4

object named as

Susan Lucas

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Europe PubMed Central

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Cynthia D Jeffries

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object named as

Cynthia D Jeffries

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11

object named as

Hope Tice

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Europe PubMed Central

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object named as

John C Detter

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object named as

Alex Copeland

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Karen W Davenport

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object named as

Karen Davenport

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9

object named as

Nancy Hammon

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Europe PubMed Central

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Kerrie W. Berry

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object named as

Kerrie W Berry

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Europe PubMed Central

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19

object named as

Yun-Juan Chang

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Europe PubMed Central

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object named as

Eileen Dalin

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Europe PubMed Central

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Lynne A. Goodwin

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object named as

Lynne A Goodwin

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author name string

Paul Richardson

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Europe PubMed Central

1 August 2017

publication date

26 September 2012

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Europe PubMed Central

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Standards in genomic sciences

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7

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1

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44-58

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Europe PubMed Central

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https://scigraph.springernature.com/pub.10.4056/sigs.3006378

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Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1(T)), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus Spha

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6 July 2018

The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata

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6 July 2018

Update of the All-Species Living Tree Project based on 16S and 23S rRNA sequence analyses

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6 July 2018

Prodigal: prokaryotic gene recognition and translation initiation site identification

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Molecular Basis for Enzymatic Sulfite Oxidation: HOW THREE CONSERVED ACTIVE SITE RESIDUES SHAPE ENZYME ACTIVITY

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6 July 2018

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The genome of the versatile nitrogen fixer Azorhizobium caulinodans ORS571

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6 July 2018

The minimum information about a genome sequence (MIGS) specification

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AxPcoords & parallel AxParafit: statistical co-phylogenetic analyses on thousands of taxa

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6 July 2018

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6 July 2018

Starkeya koreensis sp. nov., isolated from rice straw

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6 July 2018

Kinetic and structural evidence for the importance of Tyr236 for the integrity of the Mo active site in a bacterial sulfite dehydrogenase.

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6 July 2018

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

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6 July 2018

Thiosulfate Oxidation and Electron Transport in Thiobacillus novellus.

1 reference

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6 July 2018

Cultivation of Organisms Concerned in the Oxidation of Thiosulfate

1 reference

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6 July 2018

The hierarchical system of the 'Alphaproteobacteria': description of Hyphomonadaceae fam. nov., Xanthobacteraceae fam. nov. and Erythrobacteraceae fam. nov

1 reference

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6 July 2018

Improved prediction of signal peptides: SignalP 3.0

1 reference

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6 July 2018

Thiobacillus novellus. I. Growth on organic and inorganic media

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6 July 2018

Rfam: an RNA family database

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6 July 2018

Multiple sequence alignment using partial order graphs

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3570799

6 July 2018

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

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6 July 2018

Proposal for the reclassification of Thiobacillus novellus as Starkeya novella gen. nov., comb. nov., in the alpha-subclass of the Proteobacteria

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Gene ontology: tool for the unification of biology

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6 July 2018

Sulfite:Cytochrome c oxidoreductase from Thiobacillus novellus. Purification, characterization, and molecular biology of a heterodimeric member of the sulfite oxidase family

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3570799

6 July 2018

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

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6 July 2018

List of Bacterial Names with Standing in Nomenclature: a folder available on the Internet

1 reference

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6 July 2018

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

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6 July 2018

https://api.crossref.org/works/10.4056%2FSIGS.3006378

21 January 2018

Regulation of glucose transport and metabolism in Thiobacillus novellus.

1 reference

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6 July 2018

Sulfite oxidase activity in Thiobacillus novellus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3570799

6 July 2018

Catabolite Repression in the Facultative Chemoautotroph Thiobacillus novellus

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New Facultative Thiobacillus and a Reevaluation of the Heterotrophic Potential of Thiobacillus novellus

1 reference

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6 July 2018

Isolation and characterization of a bacteriophage for Thiobacillus novellus

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6 July 2018

Basic local alignment search tool

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Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya

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Cytochromes c of Nitrobacter winogradskyi and Thiobacillus novellus: structure, function and evolution

1 reference

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Oxalate, formate, formamide, and methanol metabolism in Thiobacillus novellus

1 reference

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6 July 2018

Subunits of Cytochrome a-Type Terminal Oxidases Derived from Thiobacillus novellus and Nitrobacter agilis1

1 reference

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6 July 2018

Thiobacillus novelluscytochrome oxidase can separate some eucaryotic cytochromesc

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6 July 2018

Approved Lists of Bacterial Names

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21 January 2018

Carbon dioxide fixation and carboxydismutase in Thiobacillusnovellus

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21 January 2018

Evidence for two pathways of thiosulfate oxidation in Starkeya novella (formerly Thiobacillus novellus).

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21 January 2018

Molecular basis of intramolecular electron transfer in sulfite-oxidizing enzymes is revealed by high resolution structure of a heterodimeric complex of the catalytic molybdopterin subunit and a c-type cytochrome subunit

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https://api.crossref.org/works/10.4056%2FSIGS.3006378

21 January 2018

List of new names and new combinations previously effectively, but not validly, published

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21 January 2018

GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes

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21 January 2018

COPYCAT : cophylogenetic analysis tool

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21 January 2018

Purification of Thiobacillus novellus sulfite oxidase. Evidence for the presence of heme and molybdenum

1 reference

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12 December 2020

based on heuristic

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A comparative survey of several bacterial aa3-type cytochrome c oxidases

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The formation of sulphite during the oxidation of thiosulphate by Thiobacillus novellus

1 reference

https://pubmed.ncbi.nlm.nih.gov/23450099

12 December 2020

based on heuristic

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Thiobacillus novellus Cytochrome c Oxidase Contains One Heme a Molecule and One Copper Atom per Catalytic Unit

1 reference

https://pubmed.ncbi.nlm.nih.gov/23450099

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cytochrome a-type terminal oxidase derived from Thiobacillus novellus. Molecular and enzymatic properties

1 reference

https://pubmed.ncbi.nlm.nih.gov/23450099

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Short circuiting a sulfite oxidising enzyme with direct electrochemistry: active site substitutions and their effect on catalysis and electron transfer

1 reference

https://pubmed.ncbi.nlm.nih.gov/23450099

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Direct electrochemistry of a bacterial sulfite dehydrogenase

1 reference

https://pubmed.ncbi.nlm.nih.gov/23450099

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The effects of several nucleotides on the molecular state and catalytic activity of Thiobacillus novellus cytochrome c oxidase. ATP affects the oxidase uniquely

1 reference

https://pubmed.ncbi.nlm.nih.gov/23450099

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.4056/SIGS.3006378

1 reference

Europe PubMed Central

1 August 2017

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Europe PubMed Central

1 August 2017

1 reference

Europe PubMed Central

1 August 2017

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