Mapping Dmef2-binding regulatory modules by using a ChIP-enriched in silico targets approach (Q34234615)

31 July 2017

Mapping Dmef2-binding regulatory modules by using a ChIP-enriched in silico targets approach (English)

1 reference

31 July 2017

Guillaume Junion

1

1 reference

ORCID Public Data File 2021

author name string

Teresa Jagla

2

1 reference

31 July 2017

Sebastien Duplant

3

1 reference

31 July 2017

Romain Tapin

4

1 reference

31 July 2017

Jean-Philippe Da Ponte

5

1 reference

31 July 2017

Krzysztof Jagla

6

1 reference

31 July 2017

language of work or name

English

0 references

publication date

9 December 2005

1 reference

Proceedings of the National Academy of Sciences of the United States of America

31 July 2017

6

1 reference

based on heuristic

inferred from page(s)

published in

1 reference

31 July 2017

102

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31 July 2017

51

1 reference

31 July 2017

18479-18484

1 reference

Quantitative analysis of binding motifs mediating diverse spatial readouts of the Dorsal gradient in the Drosophila embryo

31 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317932

Mapping DNA-protein interactions in large genomes by sequence tag analysis of genomic enrichment

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317932

MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317932

Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317932

Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317932

Genome-wide mapping of in vivo targets of the Drosophila transcription factor Kruppel

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317932

CisOrtho: a program pipeline for genome-wide identification of transcription factor target genes using phylogenetic footprinting

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317932

Positive autoregulation of the Myocyte enhancer factor-2 myogenic control gene during somatic muscle development in Drosophila

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317932

Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317932

Distribution of NF-kappaB-binding sites across human chromosome 22

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317932

Target Explorer: An automated tool for the identification of new target genes for a specified set of transcription factors

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317932

Finding Functional Features in Saccharomyces Genomes by Phylogenetic Footprinting

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317932

Genome-wide identification of in vivo Drosophila Engrailed-binding DNA fragments and related target genes.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317932

Promoters can contribute to the elucidation of protein function

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317932

Computation-based discovery of related transcriptional regulatory modules and motifs using an experimentally validated combinatorial model

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317932

Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317932

E2F integrates cell cycle progression with DNA repair, replication, and G(2)/M checkpoints

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317932

Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317932

Genome-wide analysis of clustered Dorsal binding sites identifies putative target genes in the Drosophila embryo

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317932

A novel Drosophila, mef2-regulated muscle gene isolated in a subtractive hybridization-based molecular screen using small amounts of zygotic mutant RNA.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317932

Requirements of Kettin, a giant muscle protein highly conserved in overall structure in evolution, for normal muscle function, viability, and flight activity of Drosophila

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317932

Transcriptional control of muscle development by myocyte enhancer factor-2 (MEF2) proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317932

Presynaptic development at the Drosophila neuromuscular junction: assembly and localization of presynaptic active zones.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317932

Combinatorial control of muscle development by basic helix-loop-helix and MADS-box transcription factors

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317932

Myocyte-specific enhancer factor 2 acts cooperatively with a muscle activator region to regulate Drosophila tropomyosin gene muscle expression

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317932

The delta-crystallin enhancer-binding protein delta EF1 is a repressor of E2-box-mediated gene activation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317932

A series of mutations in the D-MEF2 transcription factor reveal multiple functions in larval and adult myogenesis in Drosophila.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317932

Functional promoter modules can be detected by formal models independent of overall nucleotide sequence similarity.

6 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0507030102

Drosophila MEF2, a transcription factor that is essential for myogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0507030102

Requirement of MADS domain transcription factor D-MEF2 for muscle formation in Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0507030102

Control of Drosophila paramyosin/miniparamyosin gene expression. Differential regulatory mechanisms for muscle-specific transcription.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0507030102

Drosophila MEF2 is a direct regulator of Actin57B transcription in cardiac, skeletal, and visceral muscle lineages.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0507030102

Independent regulatory elements in the upstream region of the Drosophila beta 3 tubulin gene (beta Tub60D) guide expression in the dorsal vessel and the somatic muscles.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0507030102

Drosophila Lame duck, a novel member of the Gli superfamily, acts as a key regulator of myogenesis by controlling fusion-competent myoblast development

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317932

ladybird determines cell fate decisions during diversification of Drosophila somatic muscles

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16339902

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Getting hip to the chip

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16339902

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0507030102

1 reference

31 July 2017

0 references

1 reference

31 July 2017

1 reference