Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura (Q24801531)

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English	Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura	scientific article

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scholarly article

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Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura (English)

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Drosophila melanogaster

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Drosophila pseudoobscura

object named as

Drosophila pseudoobscura

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based on heuristic

inferred from title

Michael B. Eisen

6

object named as

Michael B Eisen

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Benjamin P Berman

object named as

Benjamin P Berman

1

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Steven Salzberg

object named as

Steven L Salzberg

4

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Susan E. Celniker

7

object named as

Susan E Celniker

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author name string

Barret D Pfeiffer

2

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Todd R Laverty

3

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Gerald M Rubin

5

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language of work or name

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publication date

2004

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5

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9

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R61

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Benchmarking tools for the alignment of functional noncoding DNA

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Statistical extraction of Drosophila cis-regulatory modules using exhaustive assessment of local word frequency

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Conservation of regulatory elements between two species of Drosophila

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Comparative genomics

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Systematic determination of patterns of gene expression during Drosophila embryogenesis

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Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo

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7 April 2017

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7 April 2017

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7 April 2017

Distance preferences in the arrangement of binding motifs and hierarchical levels in organization of transcription regulatory information.

1 reference

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Long-range enhancer-promoter interactions in the Scr-Antp interval of the Drosophila Antennapedia complex

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28 September 2017

Profiling patterned transcripts in Drosophila embryos

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28 September 2017

Computation-based discovery of related transcriptional regulatory modules and motifs using an experimentally validated combinatorial model

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28 September 2017

Promoter-proximal tethering elements regulate enhancer-promoter specificity in the Drosophila Antennapedia complex

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28 September 2017

Dorsal gradient networks in the Drosophila embryo

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28 September 2017

Extraction of functional binding sites from unique regulatory regions: the Drosophila early developmental enhancers.

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28 September 2017

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28 September 2017

Detection of cis-element clusters in higher eukaryotic DNA.

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28 September 2017

Selection intensity against deleterious mutations in RNA secondary structures and rate of compensatory nucleotide substitutions

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28 September 2017

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28 September 2017

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28 September 2017

Evidence for stabilizing selection in a eukaryotic enhancer element.

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

The correct activation of Antennapedia and bithorax complex genes requires the fushi tarazu gene

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28 September 2017

Autoregulatory and gap gene response elements of the even-skipped promoter of Drosophila

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28 September 2017

The bx region enhancer, a distant cis-control element of the Drosophila Ubx gene and its regulation by hunchback and other segmentation genes

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28 September 2017

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28 September 2017

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28 September 2017

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30 May 2018

Analysis of an even-skipped rescue transgene reveals both composite and discrete neuronal and early blastoderm enhancers, and multi-stripe positioning by gap gene repressor gradients

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30 May 2018

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30 May 2018

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30 May 2018

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30 May 2018

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30 May 2018

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30 May 2018

Krüppel requirement for knirps enhancement reflects overlapping gap gene activities in the Drosophila embryo

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30 May 2018

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30 May 2018

The Drosophila segmentation gene runt has an extended cis-regulatory region that is required for vital expression at other stages of development

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30 May 2018

Expected rates and modes of evolution of enhancer sequences

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28 November 2018

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28 November 2018

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28 November 2018

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28 November 2018

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28 November 2018

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odd-skipped is expressed in multiple tissues during Drosophila embryogenesis.

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28 November 2018

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28 November 2018

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28 November 2018

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28 November 2018

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28 November 2018

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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10.1186/GB-2004-5-9-R61

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Consolidated OpenCitations Corpus – April 2017

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OpenCitations bibliographic resource ID

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Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

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Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PubMed publication ID

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Consolidated OpenCitations Corpus – April 2017

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