Histone-fold domain protein NF-Y promotes chromatin accessibility for cell type-specific master transcription factors. (Q34149107)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25132174%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

title

Histone-fold domain protein NF-Y promotes chromatin accessibility for cell type-specific master transcription factors (English)

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12 March 2020

0 references

1

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12 March 2020

Pengyi Yang

2

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12 March 2020

Johannes M. Freudenberg

5

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12 March 2020

author name string

Amanda E Conway

3

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12 March 2020

Senthilkumar Cinghu

4

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12 March 2020

Sailu Yellaboina

6

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12 March 2020

Raja Jothi

7

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publication date

14 August 2014

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12 March 2020

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12 March 2020

volume

55

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12 March 2020

page(s)

708-722

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12 March 2020

issue

5

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INO80 facilitates pluripotency gene activation in embryonic stem cell self-renewal, reprogramming, and blastocyst development

12 March 2020

cites work

1 reference

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Integrative framework for identification of key cell identity genes uncovers determinants of ES cell identity and homeostasis

5 July 2018

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Single-molecule dynamics of enhanceosome assembly in embryonic stem cells

5 July 2018

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NF-Y inactivation causes atypical neurodegeneration characterized by ubiquitin and p62 accumulation and endoplasmic reticulum disorganization

5 July 2018

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Chromatin connectivity maps reveal dynamic promoter-enhancer long-range associations

5 July 2018

1 reference

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NF-Y coassociates with FOS at promoters, enhancers, repetitive elements, and inactive chromatin regions, and is stereo-positioned with growth-controlling transcription factors

5 July 2018

1 reference

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A central role for TFIID in the pluripotent transcription circuitry

5 July 2018

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Sequence-specific transcription factor NF-Y displays histone-like DNA binding and H2B-like ubiquitination

5 July 2018

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Facilitators and impediments of the pluripotency reprogramming factors' initial engagement with the genome

5 July 2018

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Genome-wide nucleosome positioning during embryonic stem cell development

5 July 2018

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Master regulators or lineage-specifying? Changing views on CD4+ T cell transcription factors

5 July 2018

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The short isoform of NF-YA belongs to the embryonic stem cell transcription factor circuitry

5 July 2018

1 reference

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ChromHMM: automating chromatin-state discovery and characterization

5 July 2018

1 reference

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Inactivation of CBF/NF-Y in postnatal liver causes hepatocellular degeneration, lipid deposition, and endoplasmic reticulum stress

5 July 2018

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Identification of CTCF as a master regulator of the clustered protocadherin genes

5 July 2018

1 reference

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Acute depletion of Tet1-dependent 5-hydroxymethylcytosine levels impairs LIF/Stat3 signaling and results in loss of embryonic stem cell identity

5 July 2018

1 reference

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ChIP-Seq data analysis: identification of protein-DNA binding sites with SISSRs peak-finder

5 July 2018

1 reference

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NF-Y is necessary for hematopoietic stem cell proliferation and survival

5 July 2018

1 reference

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Pioneer transcription factors: establishing competence for gene expression

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4157648

NF-Y and the transcriptional activation of CCAAT promoters.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4157648

esBAF facilitates pluripotency by conditioning the genome for LIF/STAT3 signalling and by regulating polycomb function

5 July 2018

1 reference

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Specific inhibition of NF-Y subunits triggers different cell proliferation defects

5 July 2018

1 reference

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Sequence-specific regulator Prdm14 safeguards mouse ESCs from entering extraembryonic endoderm fates

5 July 2018

1 reference

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Histone H3K27ac separates active from poised enhancers and predicts developmental state

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4157648

A genome-wide RNAi screen reveals determinants of human embryonic stem cell identity.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4157648

A Myc network accounts for similarities between embryonic stem and cancer cell transcription programs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4157648

Mediator and cohesin connect gene expression and chromatin architecture

5 July 2018

1 reference

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Widespread transcription at neuronal activity-regulated enhancers

5 July 2018

1 reference

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Uncovering early response of gene regulatory networks in ESCs by systematic induction of transcription factors

5 July 2018

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Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells

5 July 2018

1 reference

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Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data

5 July 2018

1 reference

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Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

5 July 2018

1 reference

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Systematic identification of cis-regulatory sequences active in mouse and human embryonic stem cells

5 July 2018

1 reference

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A dominant-negative form of mouse SOX2 induces trophectoderm differentiation and progressive polyploidy in mouse embryonic stem cells

5 July 2018

1 reference

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High-throughput screen for genes predominantly expressed in the ICM of mouse blastocysts by whole mount in situ hybridization

5 July 2018

1 reference

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Chromatin immunoprecipitation (ChIP) on chip experiments uncover a widespread distribution of NF-Y binding CCAAT sites outside of core promoters.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4157648

NF-Y is essential for the recruitment of RNA polymerase II and inducible transcription of several CCAAT box-containing genes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4157648

A gene atlas of the mouse and human protein-encoding transcriptomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4157648

The NF-YB/NF-YC structure gives insight into DNA binding and transcription regulation by CCAAT factor NF-Y

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4157648

CBF/NF-Y functions both in nucleosomal disruption and transcription activation of the chromatin-assembled topoisomerase IIalpha promoter. Transcription activation by CBF/NF-Y in chromatin is dependent on the promoter structure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4157648

Formation of pluripotent stem cells in the mammalian embryo depends on the POU transcription factor Oct4

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4157648

Role of the CCAAT-binding protein CBF/NF-Y in transcription

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4157648

Recombinant rat CBF-C, the third subunit of CBF/NFY, allows formation of a protein-DNA complex with CBF-A and CBF-B and with yeast HAP2 and HAP3

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4157648

CTCF is required for neural development and stochastic expression of clustered Pcdh genes in neurons.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4157648

The histone-fold protein complex CHRAC-15/17 enhances nucleosome sliding and assembly mediated by ACF.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4157648

Stable expression of a dominant negative mutant of CCAAT binding factor/NF-Y in mouse fibroblast cells resulting in retardation of cell growth and inhibition of transcription of various cellular genes

28 October 2018

1 reference

12 December 2020

The B subunit of the CCAAT box binding transcription factor complex (CBF/NF-Y) is essential for early mouse development and cell proliferation

1 reference

12 December 2020

Temporal order of chromatin structural changes associated with activation of the major chicken vitellogenin gene

1 reference

12 December 2020

Down-regulation of cyclin B1 gene transcription in terminally differentiated skeletal muscle cells is associated with loss of functional CCAAT-binding NF-Y complex

1 reference

12 December 2020

A chromatin-modifying function of JNK during stem cell differentiation

1 reference

12 December 2020

10.1016/J.MOLCEL.2014.07.005

Identifiers

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12 March 2020

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12 March 2020

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