Calibration choice, rate smoothing, and the pattern of tetrapod diversification according to the long nuclear gene RAG-1 (Q29618785)

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=17654361

30 April 2017

author name string

Hugall AF

series ordinal

1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=17654361

30 April 2017

Foster R

series ordinal

2

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=17654361

30 April 2017

Lee MS

series ordinal

3

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=17654361

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=17654361

30 April 2017

language of work or name

1 reference

30 April 2017

publication date

August 2007

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=17654361

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=17654361

30 April 2017

volume

56

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=17654361

30 April 2017

page(s)

543-63

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=17654361

30 April 2017

issue

4

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=17654361

A new phylogenetic marker, apolipoprotein B, provides compelling evidence for eutherian relationships

30 April 2017

cites work

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Nuclear gene sequences provide evidence for the monophyly of australidelphian marsupials

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Immunoglobulin genetics of Ornithorhynchus anatinus (platypus) and Tachyglossus aculeatus (short-beaked echidna).

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Paleontological evidence to date the tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Examining Basal Avian Divergences with Mitochondrial Sequences: Model Complexity, Taxon Sampling, and Sequence Length

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Nuclear protein-coding genes support lungfish and not the coelacanth as the closest living relatives of land vertebrates

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Phylogenetic position of turtles among amniotes: evidence from mitochondrial and nuclear genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Mass survival of birds across the Cretaceous-Tertiary boundary: molecular evidence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

A Devonian tetrapod-like fish and the evolution of the tetrapod body plan

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Earliest lizard from the late triassic (Carnian) of India

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Diversification of Neoaves: integration of molecular sequence data and fossils

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Evolutionary trees from DNA sequences: A maximum likelihood approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Reading the entrails of chickens: molecular timescales of evolution and the illusion of precision

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Basal divergences in birds and the phylogenetic utility of the nuclear RAG-1 gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Phylogenetic relationships among gekkotan lizards inferred from C-mos nuclear DNA sequences and a new classification of the Gekkota

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Four new avian mitochondrial genomes help get to basic evolutionary questions in the late cretaceous.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Time scale of eutherian evolution estimated without assuming a constant rate of molecular evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Continental breakup and the ordinal diversification of birds and mammals

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

A molecular phylogeny of reptiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Accuracy of rate estimation using relaxed-clock models with a critical focus on the early metazoan radiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Phylogeny and comparative substitution rates of frogs inferred from sequences of three nuclear genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Molecular claims of Gondwanan age for Australian agamid lizards are untenable

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Sister group relationship of turtles to the bird-crocodilian clade revealed by nuclear DNA-coded proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Mitogenomic analyses place the gharial (Gavialis gangeticus) on the crocodile tree and provide pre-K/T divergence times for most crocodilians

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

The pattern and timing of diversification of Philippine endemic rodents: evidence from mitochondrial and nuclear gene sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Systematics of the Lizard Family Pygopodidae with Implications for the Diversification of Australian Temperate Biotas

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Marsupials and Eutherians reunited: genetic evidence for the Theria hypothesis of mammalian evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

The platypus is not a rodent: DNA hybridization, amniote phylogeny and the palimpsest theory

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Molecular phylogenetics and evolution of turtles

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

A molecular timescale for vertebrate evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Mitochondrial genomes from major lizard families suggest their phylogenetic relationships and ancient radiations

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Molecular evidence and marine snake origins

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Model type, implicit data weighting, and model averaging in phylogenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Snake phylogeny based on osteology, soft anatomy and ecology

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

The importance of proper model assumption in bayesian phylogenetics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Parallel adaptive radiations in two major clades of placental mammals

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Recent Advances in the (Molecular) Phylogeny of Vertebrates

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Morphological homoplasy, life history evolution, and historical biogeography of plethodontid salamanders inferred from complete mitochondrial genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Four well-constrained calibration points from the vertebrate fossil record for molecular clock estimates.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Review of the monotreme fossil record and comparison of palaeontological and molecular data

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Assessing concordance of fossil calibration points in molecular clock studies: an example using turtles.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Assessing the quality of molecular divergence time estimates by fossil calibrations and fossil-based model selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Arizonasaurus and its implications for archosaur divergence

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Marsupial relationships and a timeline for marsupial radiation in South Gondwana.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Dispersal and vicariance: the complex evolutionary history of boid snakes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Lizards from the Lower Cretaceous (Aptian–Albian) Antlers and Cloverly Formations

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

The Late Triassic pseudosuchian Revueltosaurus callenderi and its implications for the diversity of early ornithischian dinosaurs

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Mathematical elegance with biochemical realism: the covarion model of molecular evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

A mitogenomic timescale for birds detects variable phylogenetic rates of molecular evolution and refutes the standard molecular clock

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

The root of the mammalian tree inferred from whole mitochondrial genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Birds in a bush: five genes indicate explosive evolution of avian orders

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Model-based multi-locus estimation of decapod phylogeny and divergence times

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Model selection and model averaging in phylogenetics: advantages of akaike information criterion and bayesian approaches over likelihood ratio tests

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Selecting the Best-Fit Model of Nucleotide Substitution

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Molecular timescales and the fossil record: a paleontological perspective.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Molecular systematics of primary reptilian lineages and the tuatara mitochondrial genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Turtles as diapsid reptiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Archaeobatrachian paraphyly and pangaean diversification of crown-group frogs

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Evaluating molecular clock calibrations using Bayesian analyses with soft and hard bounds

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Phylogeny of caecilian amphibians (Gymnophiona) based on complete mitochondrial genomes and nuclear RAG1

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Initial diversification of living amphibians predated the breakup of Pangaea

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Dinosaurian precursors from the Middle Triassic of Argentina: Lagerpeton chanarensis

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Choosing Appropriate Substitution Models for the Phylogenetic Analysis of Protein-Coding Sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Early penguin fossils, plus mitochondrial genomes, calibrate avian evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Placental mammal diversification and the Cretaceous-Tertiary boundary

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Molecular phylogenetics of squamata: the position of snakes, amphisbaenians, and dibamids, and the root of the squamate tree.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

The platypus is in its place: nuclear genes and indels confirm the sister group relation of monotremes and Therians

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Calibration of galliform molecular clocks using multiple fossils and genetic partitions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Error in estimation of rate and time inferred from the early amniote fossil record and avian molecular clocks

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Calibration of avian molecular clocks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

The phylogeny of squamate reptiles (lizards, snakes, and amphisbaenians) inferred from nine nuclear protein-coding genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Molecular dates for the "cambrian explosion": the influence of prior assumptions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

The evolution of tribospheny and the antiquity of mammalian clades.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Redescription ofTurfanosuchus dabanensis(Archosauriformes) and new information on its phylogenetic relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Complete mitochondrial genome suggests diapsid affinities of turtles

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Mitogenomic perspectives on the origin and phylogeny of living amphibians

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Increased taxon sampling greatly reduces phylogenetic error

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

Fossil lizards from the Jurassic Kota Formation of India

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701477825

10.1080/10635150701477825

21 January 2018

Identifiers

DOI

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=17654361

30 April 2017

Consolidated OpenCitations Corpus – April 2017

3413798

3413798

1 reference

Consolidated OpenCitations Corpus – April 2017

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=17654361

2 references

30 April 2017

Consolidated OpenCitations Corpus – April 2017