Batch effect correction for genome-wide methylation data with Illumina Infinium platform (Q34101704)

31 July 2017

Batch effect correction for genome-wide methylation data with Illumina Infinium platform (English)

1 reference

31 July 2017

Zhifu Sun

1

0 references

Christopher J. Klein

object named as

Christopher J Klein

6

0 references

Vesna D Garovic

7

object named as

Vesna D Garovic

1 reference

31 July 2017

High Seng Chai

2

1 reference

31 July 2017

Yanhong Wu

3

1 reference

31 July 2017

Wendy M White

4

1 reference

31 July 2017

Krishna V Donkena

5

1 reference

31 July 2017

Terry M Therneau

8

1 reference

31 July 2017

Jean-Pierre A Kocher

9

1 reference

31 July 2017

16 December 2011

1 reference

31 July 2017

1 reference

31 July 2017

4

1 reference

31 July 2017

84

1 reference

https://scigraph.springernature.com/pub.10.1186/1755-8794-4-84

31 July 2017

0 references

cites work

Genome-wide DNA methylation profiling using Infinium® assay

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265417

Absolute quantitation of DNA methylation of 28 candidate genes in prostate cancer using pyrosequencing.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265417

Preprocessing differential methylation hybridization microarray data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265417

DNA methylation profiling reveals novel biomarkers and important roles for DNA methyltransferases in prostate cancer

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265417

DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265417

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265417

DNA methylation in glioblastoma: impact on gene expression and clinical outcome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265417

Altered DNA methylation in leukocytes with trisomy 21

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265417

Impaired hydroxylation of 5-methylcytosine in myeloid cancers with mutant TET2

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265417

Promoter hypermethylation in prostate cancer

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265417

Tackling the widespread and critical impact of batch effects in high-throughput data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265417

Genome-wide DNA methylation analysis for diabetic nephropathy in type 1 diabetes mellitus

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265417

A comparison of batch effect removal methods for enhancement of prediction performance using MAQC-II microarray gene expression data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265417

An integrative multi-dimensional genetic and epigenetic strategy to identify aberrant genes and pathways in cancer

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265417

Genome-wide DNA methylation analysis in cohesin mutant human cell lines

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265417

Supervised normalization of microarrays

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265417

Human aging-associated DNA hypermethylation occurs preferentially at bivalent chromatin domains

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265417

Age-dependent DNA methylation of genes that are suppressed in stem cells is a hallmark of cancer.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265417

Principles and challenges of genomewide DNA methylation analysis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265417

Epigenetic profiling of somatic tissues from human autopsy specimens identifies tissue- and individual-specific DNA methylation patterns

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265417

Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265417

The removal of multiplicative, systematic bias allows integration of breast cancer gene expression datasets - improving meta-analysis and prediction of prognosis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265417

Capturing heterogeneity in gene expression studies by surrogate variable analysis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265417

Adjusting batch effects in microarray expression data using empirical Bayes methods

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265417

Adjustment of systematic microarray data biases

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265417

Human housekeeping genes are compact

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265417

The power and the promise of DNA methylation markers

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265417

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265417

Singular value decomposition for genome-wide expression data processing and modeling

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265417

lumi: a pipeline for processing Illumina microarray

28 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1755-8794-4-84

Removing batch effects in analysis of expression microarray data: an evaluation of six batch adjustment methods

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1755-8794-4-84

Aberrant global methylation patterns affect the molecular pathogenesis and prognosis of multiple myeloma

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22171553

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1755-8794-4-84

1 reference

Dimensions Publication ID

31 July 2017

0 references

1 reference

31 July 2017

1 reference