Genome-wide identification of cis-regulatory motifs and modules underlying gene coregulation using statistics and phylogeny (Q34092990)

31 July 2017

Genome-wide identification of cis-regulatory motifs and modules underlying gene coregulation using statistics and phylogeny (English)

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31 July 2017

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4

Vincent Hakim

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31 July 2017

Hervé Rouault

1

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31 July 2017

Khalil Mazouni

series ordinal

2

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31 July 2017

Lydie Couturier

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3

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31 July 2017

François Schweisguth

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5

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31 July 2017

language of work or name

English

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publication date

29 July 2010

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Proceedings of the National Academy of Sciences of the United States of America

31 July 2017

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31 July 2017

107

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31 July 2017

33

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31 July 2017

14615-14620

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describes a project that uses

31 July 2017

ImageJ

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11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC2930411/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

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Van Gogh and Frizzled act redundantly in the Drosophila sensory organ precursor cell to orient its asymmetric division

5 July 2018

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5 July 2018

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Using hexamers to predict cis-regulatory motifs in Drosophila.

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Some statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the Drosophila genome: the fluffy-tail test

5 July 2018

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Computational methods for transcriptional regulation

5 July 2018

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Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals

5 July 2018

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MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model

5 July 2018

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The proneural proteins Atonal and Scute regulate neural target genes through different E-box binding sites

5 July 2018

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Transcriptional control in the segmentation gene network of Drosophila

5 July 2018

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phyllopod is a target gene of proneural proteins in Drosophila external sensory organ development

5 July 2018

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Statistical extraction of Drosophila cis-regulatory modules using exhaustive assessment of local word frequency

5 July 2018

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Combining phylogenetic data with co-regulated genes to identify regulatory motifs

5 July 2018

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Senseless acts as a binary switch during sensory organ precursor selection.

5 July 2018

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5 July 2018

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SCORE: a computational approach to the identification of cis-regulatory modules and target genes in whole-genome sequence data. Site clustering over random expectation.

5 July 2018

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Computation-based discovery of related transcriptional regulatory modules and motifs using an experimentally validated combinatorial model

5 July 2018

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Proneural genes and the specification of neural cell types

5 July 2018

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Deciphering gene expression regulatory networks.

5 July 2018

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Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

5 July 2018

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Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae

5 July 2018

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Discrete enhancer elements mediate selective responsiveness of enhancer of split complex genes to common transcriptional activators

5 July 2018

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Proneural gene self-stimulation in neural precursors: an essential mechanism for sense organ development that is regulated by Notch signaling

5 July 2018

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Specificity, free energy and information content in protein-DNA interactions

5 July 2018

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lola encodes a putative transcription factor required for axon growth and guidance in Drosophila

5 July 2018

1 reference

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Proneural clusters of achaete-scute expression and the generation of sensory organs in the Drosophila imaginal wing disc.

5 July 2018

1 reference

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The choice of cell fate in the epidermis of Drosophila.

5 July 2018

1 reference

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Transcriptional activation by heterodimers of the achaete-scute and daughterless gene products of Drosophila

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2930411

The Drosophila extramacrochaetae protein antagonizes sequence-specific DNA binding by daughterless/achaete-scute protein complexes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2930411

Identifying cis-regulatory modules by combining comparative and compositional analysis of DNA.

5 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1002876107

The discovery, positioning and verification of a set of transcription-associated motifs in vertebrates

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1002876107

Prediction of similarly acting cis-regulatory modules by subsequence profiling and comparative genomics in Drosophila melanogaster and D.pseudoobscura.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1002876107

Lateral inhibition in proneural clusters: cis-regulatory logic and default repression by Suppressor of Hairless

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1002876107

Direct downstream targets of proneural activators in the imaginal disc include genes involved in lateral inhibitory signaling

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1002876107

Sponge genes provide new insight into the evolutionary origin of the neurogenic circuit.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1002876107

Evidence that nervy, the Drosophila homolog of ETO/MTG8, promotes mechanosensory organ development by enhancing Notch signaling

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1002876107

Genetic programs activated by proneural proteins in the developing Drosophila PNS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1002876107

The neurogenic suppressor of hairless DNA-binding protein mediates the transcriptional activation of the enhancer of split complex genes triggered by Notch signaling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1002876107

Suppressor of hairless directly activates transcription of enhancer of split complex genes in response to Notch receptor activity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1002876107

Alternative splicing of lola generates 19 transcription factors controlling axon guidance in Drosophila.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1002876107

Epigenetic silencers and Notch collaborate to promote malignant tumours by Rb silencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1002876107

Lola regulates cell fate by antagonizing Notch induction in the Drosophila eye.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1002876107

A probabilistic method to detect regulatory modules.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2930411

Cis-regulatory elements of the mitotic regulator, string/Cdc25.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2930411

28 October 2018

Identifiers

DOI

10.1073/PNAS.1002876107

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31 July 2017

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31 July 2017

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