Experimental determination of the evolvability of a transcription factor (Q33511416)

27 July 2017

Experimental determination of the evolvability of a transcription factor (English)

1 reference

27 July 2017

Sebastian J Maerkl

1

0 references

Stephen Quake

series ordinal

2

object named as

Stephen R Quake

1 reference

PubMed ID

19841254

27 July 2017

language of work or name

English

0 references

publication date

19 October 2009

1 reference

Proceedings of the National Academy of Sciences of the United States of America

27 July 2017

6

1 reference

based on heuristic

inferred from page(s)

published in

1 reference

27 July 2017

106

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27 July 2017

44

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27 July 2017

18650-18655

1 reference

An in vitro microfluidic approach to generating protein-interaction networks

27 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765923

Mutation of Hairy-and-Enhancer-of-Split-7 in humans causes spondylocostal dysostosis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765923

Energy-dependent fitness: a quantitative model for the evolution of yeast transcription factor binding sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765923

Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765923

Clustal W and Clustal X version 2.0

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765923

The evolution of gene regulation by transcription factors and microRNAs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765923

A systems approach to measuring the binding energy landscapes of transcription factors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765923

Reduction/oxidation-phosphorylation control of DNA binding in the bZIP dimerization network

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765923

Expression profiling in primates reveals a rapid evolution of human transcription factors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765923

MYCN haploinsufficiency is associated with reduced brain size and intestinal atresias in Feingold syndrome.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765923

Java Treeview--extensible visualization of microarray data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765923

Convergent evolution of gene networks by single-gene duplications in higher eukaryotes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765923

Position specific variation in the rate of evolution in transcription factor binding sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765923

X-ray structures of Myc-Max and Mad-Max recognizing DNA. Molecular bases of regulation by proto-oncogenic transcription factors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765923

Phylogenetic analysis of the human basic helix-loop-helix proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765923

Evolution of transcription factor binding sites in Mammalian gene regulatory regions: conservation and turnover

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765923

Exploring the DNA-binding specificities of zinc fingers with DNA microarrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765923

DNA recognition by Cys2His2 zinc finger proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765923

SURVEY AND SUMMARY: Saccharomyces cerevisiae basic helix-loop-helix proteins regulate diverse biological processes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765923

Helix-loop-helix proteins: regulators of transcription in eucaryotic organisms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765923

Toward controlling gene expression at will: selection and design of zinc finger domains recognizing each of the 5'-GNN-3' DNA target sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765923

Co-crystal structure of sterol regulatory element binding protein 1a at 2.3 A resolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765923

Crystal structure of PHO4 bHLH domain-DNA complex: flanking base recognition

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765923

A general strategy for selecting high-affinity zinc finger proteins for diverse DNA target sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765923

Recognition by Max of its cognate DNA through a dimeric b/HLH/Z domain

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765923

Zinc finger phage: affinity selection of fingers with new DNA-binding specificities

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765923

Rates of transition and transversion in coding sequences since the human-rodent divergence

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765923

Crystal structure of transcription factor E47: E-box recognition by a basic region helix-loop-helix dimer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765923

Protein-DNA interaction. No code for recognition

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765923

A new DNA binding and dimerization motif in immunoglobulin enhancer binding, daughterless, MyoD, and myc proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765923

Evolution of protein cores. Constraints in point mutations as observed in globin tertiary structures.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765923

Two distinct transcription factors that bind the immunoglobulin enhancer microE5/kappa 2 motif

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765923

Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 A

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765923

Evolution at two levels in humans and chimpanzees

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765923

Evolvability and hierarchy in rewired bacterial gene networks

21 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0907688106

Protein-DNA interactions: amino acid conservation and the effects of mutations on binding specificity

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0907688106

A simple physical model for the prediction and design of protein-DNA interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0907688106

Microfluidic large-scale integration

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0907688106

A mutation accumulation assay reveals a broad capacity for rapid evolution of gene expression.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0907688106

MODY in Iceland is associated with mutations in HNF-1alpha and a novel mutation in NeuroD1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0907688106

Expressing the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0907688106

Geometric analysis and comparison of protein-DNA interfaces: why is there no simple code for recognition?

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19841254

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0907688106

1 reference

27 July 2017

0 references

1 reference

27 July 2017

1 reference

PubMed ID

19841254