NRG-CING: integrated validation reports of remediated experimental biomolecular NMR data and coordinates in wwPDB. (Q34090590)

30 July 2017

NRG-CING: integrated validation reports of remediated experimental biomolecular NMR data and coordinates in wwPDB. (English)

1 reference

30 July 2017

Wim F Vranken

2

0 references

John Markley

4

object named as

John L Markley

1 reference

30 July 2017

Geerten W Vuister

7

0 references

Eldon L Ulrich

5

object named as

Eldon L Ulrich

1 reference

30 July 2017

Jurgen F Doreleijers

1

1 reference

30 July 2017

Christopher Schulte

3

1 reference

30 July 2017

Gert Vriend

6

1 reference

30 July 2017

language of work or name

English

0 references

publication date

1 December 2011

1 reference

30 July 2017

Nucleic Acids Research

1 reference

30 July 2017

40

1 reference

30 July 2017

Database issue

1 reference

30 July 2017

D519-24

1 reference

Creative Commons Attribution-NonCommercial 3.0 Unported

30 July 2017

start time

12 May 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

PDB_REDO: automated re-refinement of X-ray structure models in the PDB.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245154

On the complexity of Engh and Huber refinement restraints: the angle τ as example

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245154

The RCSB Protein Data Bank: redesigned web site and web services

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245154

PDBj Mine: design and implementation of relational database interface for Protein Data Bank Japan

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245154

Validation of archived chemical shifts through atomic coordinates

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245154

The NMR restraints grid at BMRB for 5,266 protein and nucleic acid PDB entries

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245154

TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shifts

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245154

Re-refinement from deposited X-ray data can deliver improved models for most PDB entries

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245154

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245154

A global analysis of NMR distance constraints from the PDB.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245154

BioMagResBank databases DOCR and FRED containing converted and filtered sets of experimental NMR restraints and coordinates from over 500 protein PDB structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245154

RECOORD: a recalculated coordinate database of 500+ proteins from the PDB using restraints from the BioMagResBank

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245154

The CCPN data model for NMR spectroscopy: development of a software pipeline

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245154

Determinants of the endosomal localization of sorting nexin 1.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245154

Announcing the worldwide Protein Data Bank

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245154

Rapid and accurate calculation of protein 1H, 13C and 15N chemical shifts

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245154

RefDB: a database of uniformly referenced protein chemical shifts

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245154

AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245154

MOLMOL: a program for display and analysis of macromolecular structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245154

Errors in protein structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245154

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245154

PDBe: Protein Data Bank in Europe

5 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR1134

DRESS: a database of REfined solution NMR structures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR1134

Bayesian estimation of NMR restraint potential and weight: a validation on a representative set of protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR1134

A software tool for the prediction of Xaa-Pro peptide bond conformations in proteins based on 13C chemical shift statistics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR1134

Leucine side-chain conformation and dynamics in proteins from 13C NMR chemical shifts.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR1134

21 January 2018

Identifiers

DOI

10.1093/NAR/GKR1134

1 reference

journals/nar/DoreleijersVSMUVV12

30 July 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

30 July 2017

1 reference