modMine: flexible access to modENCODE data (Q34073658)

30 July 2017

modMine: flexible access to modENCODE data (English)

1 reference

30 July 2017

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20

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30 July 2017

Julie Sullivan

9

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Paul Lloyd

Paul Lloyd

12

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Nicole L Washington

Nicole L Washington

14

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Kim Rutherford

Kim Rutherford

7

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Lincoln Stein

19

Lincoln D Stein

1 reference

30 July 2017

18

Suzanna E Lewis

1 reference

30 July 2017

10

Seth Carbon

1 reference

30 July 2017

6

Rachel Lyne

1 reference

30 July 2017

3

Daniela Butano

1 reference

30 July 2017

11

Ellen T Kephart

1 reference

30 July 2017

Sergio Contrino

1

1 reference

30 July 2017

Richard N Smith

2

1 reference

30 July 2017

Adrian Carr

4

1 reference

30 July 2017

Fengyuan Hu

5

1 reference

30 July 2017

Alex Kalderimis

8

1 reference

30 July 2017

E O Stinson

13

1 reference

30 July 2017

Marc D Perry

15

1 reference

30 July 2017

Peter Ruzanov

16

1 reference

30 July 2017

Zheng Zha

17

1 reference

30 July 2017

language of work or name

English

0 references

publication date

12 November 2011

1 reference

30 July 2017

Nucleic Acids Research

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30 July 2017

40

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30 July 2017

D1082-8

1 reference

30 July 2017

Database issue

1 reference

Creative Commons Attribution-NonCommercial 3.0 Unported

30 July 2017

start time

12 May 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

Cytoscape

1 reference

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

cites work

The modENCODE Data Coordination Center: lessons in harvesting comprehensive experimental details

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245176

TargetMine, an integrated data warehouse for candidate gene prioritisation and target discovery

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245176

Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245176

Identification of functional elements and regulatory circuits by Drosophila modENCODE

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245176

NCBI GEO: archive for functional genomics data sets--10 years on

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245176

The BioGRID Interaction Database: 2011 update

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245176

Reactome: a database of reactions, pathways and biological processes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245176

The Mouse Genome Database (MGD): premier model organism resource for mammalian genomics and genetics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245176

ZFIN: enhancements and updates to the Zebrafish Model Organism Database

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245176

Cytoscape Web: an interactive web-based network browser

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245176

WormBase: a comprehensive resource for nematode research

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245176

The IntAct molecular interaction database in 2010

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245176

The Universal Protein Resource (UniProt) in 2010

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245176

Unlocking the secrets of the genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245176

MitoMiner, an integrated database for the storage and analysis of mitochondrial proteomics data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245176

FlyBase: enhancing Drosophila Gene Ontology annotations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245176

InterPro: the integrative protein signature database

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245176

Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245176

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245176

Gene Ontology annotations at SGD: new data sources and annotation methods

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245176

Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245176

A Chado case study: an ontology-based modular schema for representing genome-associated biological information

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245176

FlyMine: an integrated database for Drosophila and Anopheles genomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245176

The Rat Genome Database, update 2007--easing the path from disease to data and back again

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245176

FlyTF: a systematic review of site-specific transcription factors in the fruit fly Drosophila melanogaster

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245176

The MGED Ontology: a resource for semantics-based description of microarray experiments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245176

FlyRNAi: the Drosophila RNAi screening center database.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245176

The Gene Ontology (GO) project in 2006

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245176

The Sequence Ontology: a tool for the unification of genome annotations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245176

The generic genome browser: a building block for a model organism system database

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245176

Minimum information about a microarray experiment (MIAME)-toward standards for microarray data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245176

5 July 2018

Identifiers

DOI

10.1093/NAR/GKR921

1 reference

journals/nar/ContrinoSBCHLRKSCKLSWPRZLSM12

30 July 2017

1 reference

DBLP Dataset 2021-01-02

release_nqghtnlqa5adxeeorq4vanlaum

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/nqghtnlqa5adxeeorq4vanlaum

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMCID

3245176

1 reference

30 July 2017

1 reference