Comparison of variations detection between whole-genome amplification methods used in single-cell resequencing (Q34044621)

30 July 2017

Comparison of variations detection between whole-genome amplification methods used in single-cell resequencing (English)

1 reference

30 July 2017

whole genome sequencing

1 reference

Yong Hou

1

0 references

Jun Wang

object named as

Jun Wang

26

0 references

Hanjie Wu

object named as

Hanjie Wu

6

0 references

Yang Huanming

23

object named as

Huanming Yang

1 reference

30 July 2017

22

Xiuqing Zhang

1 reference

30 July 2017

Kui Wu

2

1 reference

30 July 2017

Xulian Shi

3

1 reference

30 July 2017

Fuqiang Li

4

1 reference

30 July 2017

Luting Song

5

1 reference

30 July 2017

Michael Dean

7

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30 July 2017

Guibo Li

8

1 reference

30 July 2017

Shirley Tsang

9

1 reference

30 July 2017

Runze Jiang

10

1 reference

30 July 2017

Xiaolong Zhang

11

1 reference

30 July 2017

Bo Li

12

1 reference

30 July 2017

Geng Liu

13

1 reference

30 July 2017

Niharika Bedekar

14

1 reference

30 July 2017

Na Lu

15

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30 July 2017

Guoyun Xie

16

1 reference

30 July 2017

Han Liang

17

1 reference

30 July 2017

Liao Chang

18

1 reference

30 July 2017

Ting Wang

19

1 reference

30 July 2017

Jianghao Chen

20

1 reference

30 July 2017

Yingrui Li

21

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30 July 2017

Xun Xu

24

1 reference

30 July 2017

Ling Wang

25

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30 July 2017

6 August 2015

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30 July 2017

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4

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30 July 2017

37

1 reference

https://scigraph.springernature.com/pub.10.1186/s13742-015-0068-3

30 July 2017

0 references

cites work

Microfluidic whole genome amplification device for single cell sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4527218

A quantitative comparison of single-cell whole genome amplification methods

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4527218

Comprehensive molecular characterization of gastric adenocarcinoma

28 July 2018

1 reference

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Single cell genomics: advances and future perspectives

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4527218

Preimplantation genetic diagnosis guided by single-cell genomics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4527218

Single-cell paired-end genome sequencing reveals structural variation per cell cycle

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4527218

A single cell level based method for copy number variation analysis by low coverage massively parallel sequencing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4527218

Probing meiotic recombination and aneuploidy of single sperm cells by whole-genome sequencing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4527218

Genome-wide detection of single-nucleotide and copy-number variations of a single human cell

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4527218

Qualimap: evaluating next-generation sequencing alignment data.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4527218

Genome-wide copy number analysis of single cells.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4527218

A programmable droplet-based microfluidic device applied to multiparameter analysis of single microbes and microbial communities

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4527218

Single-cell exome sequencing reveals single-nucleotide mutation characteristics of a kidney tumor

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4527218

Single-cell exome sequencing and monoclonal evolution of a JAK2-negative myeloproliferative neoplasm

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4527218

CREST maps somatic structural variation in cancer genomes with base-pair resolution.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4527218

Tumour evolution inferred by single-cell sequencing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4527218

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4527218

The Sequence Alignment/Map format and SAMtools

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4527218

Fast and accurate short read alignment with Burrows-Wheeler transform

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4527218

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4527218

The diploid genome sequence of an Asian individual

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4527218

Whole-genome multiple displacement amplification from single cells

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4527218

Mechanism of chimera formation during the Multiple Displacement Amplification reaction

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4527218

28 July 2018

Rubicon Genomics, Inc.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4527218

Comprehensive human genome amplification using multiple displacement amplification

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4527218

Whole genome amplification using a degenerate oligonucleotide primer allows hundreds of genotypes to be performed on less than one nanogram of genomic DNA

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4527218

Genome-wide single-cell analysis of recombination activity and de novo mutation rates in human sperm

28 July 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13742-015-0068-3

Single-neuron sequencing analysis of L1 retrotransposition and somatic mutation in the human brain

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13742-015-0068-3

Massively parallel sequencing for chromosomal abnormality testing in trophectoderm cells of human blastocysts

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13742-015-0068-3

Genome coverage and sequence fidelity of phi29 polymerase-based multiple strand displacement whole genome amplification

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13742-015-0068-3

Genome analyses of single human oocytes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13742-015-0068-3

Trimmomatic: a flexible trimmer for Illumina sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13742-015-0068-3

BamTools: a C++ API and toolkit for analyzing and managing BAM files

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13742-015-0068-3

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13742-015-0068-3

Characterizing and measuring bias in sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13742-015-0068-3

BEDTools: a flexible suite of utilities for comparing genomic features

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13742-015-0068-3

Degenerate oligonucleotide-primed PCR: General amplification of target DNA by a single degenerate primer

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13742-015-0068-3

Cancer sequencing unravels clonal evolution

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26251698

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S13742-015-0068-3

1 reference

Dimensions Publication ID

30 July 2017

0 references

1 reference

30 July 2017

1 reference