Construction of pseudomolecule sequences of the aus rice cultivar Kasalath for comparative genomics of Asian cultivated rice (Q34040888)

30 July 2017

Construction of pseudomolecule sequences of the aus rice cultivar Kasalath for comparative genomics of Asian cultivated rice (English)

1 reference

30 July 2017

1 reference

Takeshi Itoh

12

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author name string

Hiroaki Sakai

1

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30 July 2017

Hiroyuki Kanamori

2

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30 July 2017

Yuko Arai-Kichise

3

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30 July 2017

Mari Shibata-Hatta

4

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30 July 2017

Kaworu Ebana

5

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30 July 2017

Youko Oono

6

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30 July 2017

Kanako Kurita

7

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30 July 2017

Hiroko Fujisawa

8

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30 July 2017

Satoshi Katagiri

9

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30 July 2017

Yoshiyuki Mukai

10

1 reference

30 July 2017

Masao Hamada

11

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30 July 2017

Takashi Matsumoto

13

1 reference

30 July 2017

Yuichi Katayose

14

1 reference

30 July 2017

Kyo Wakasa

15

1 reference

30 July 2017

Masahiro Yano

16

1 reference

30 July 2017

Jianzhong Wu

17

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30 July 2017

26 February 2014

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30 July 2017

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30 July 2017

21

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30 July 2017

397-405

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30 July 2017

4

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describes a project that uses

30 July 2017

MUMmer

object named as

MUMmer

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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A BAC physical map of aus rice cultivar 'Kasalath', and the map-based genomic sequence of 'Kasalath' chromosome 1.

5 July 2018

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Dissecting yield-associated loci in super hybrid rice by resequencing recombinant inbred lines and improving parental genome sequences.

5 July 2018

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The advantages and limitations of trait analysis with GWAS: a review

5 July 2018

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5 July 2018

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TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

5 July 2018

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5 July 2018

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Resequencing rice genomes: an emerging new era of rice genomics

5 July 2018

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The protein kinase Pstol1 from traditional rice confers tolerance of phosphorus deficiency

5 July 2018

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Efficient de novo assembly of large genomes using compressed data structures

5 July 2018

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Dynamic intra-japonica subspecies variation and resource application

5 July 2018

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Multiple reference genomes and transcriptomes for Arabidopsis thaliana

5 July 2018

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Artificial selection for a green revolution gene during japonica rice domestication

5 July 2018

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The impact of next-generation sequencing on genomics

5 July 2018

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Limitations of next-generation genome sequence assembly

5 July 2018

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Mapping 49 quantitative trait loci at high resolution through sequencing-based genotyping of rice recombinant inbred lines

5 July 2018

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The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

5 July 2018

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Rice structural variation: a comparative analysis of structural variation between rice and three of its closest relatives in the genus Oryza

5 July 2018

1 reference

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4131834

Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice.

5 July 2018

1 reference

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Massive gene losses in Asian cultivated rice unveiled by comparative genome analysis

5 July 2018

1 reference

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BLAST+: architecture and applications

5 July 2018

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The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4131834

The Sequence Alignment/Map format and SAMtools

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4131834

Fast and accurate short read alignment with Burrows-Wheeler transform

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4131834

New insights into the history of rice domestication

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4131834

Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4131834

The Arabidopsis genome: a foundation for plant research

5 July 2018

1 reference

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The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4131834

The map-based sequence of the rice genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4131834

Genetic structure and diversity in Oryza sativa L

5 July 2018

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Versatile and open software for comparing large genomes

5 July 2018

1 reference

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Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4131834

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

5 July 2018

1 reference

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A high-density rice genetic linkage map with 2275 markers using a single F2 population.

5 July 2018

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Origin, dispersal, cultivation and variation of rice

5 July 2018

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

5 July 2018

1 reference

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Rapid isolation of high molecular weight plant DNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4131834

OGRO: The Overview of functionally characterized Genes in Rice online database

5 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FDNARES%2FDSU006

Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FDNARES%2FDSU006

Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FDNARES%2FDSU006

Comparative analysis of complete orthologous centromeres from two subspecies of rice reveals rapid variation of centromere organization and structure.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FDNARES%2FDSU006

An SNP caused loss of seed shattering during rice domestication.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FDNARES%2FDSU006

Deletion in a gene associated with grain size increased yields during rice domestication

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FDNARES%2FDSU006

Genome-wide analysis of transposon insertion polymorphisms reveals intraspecific variation in cultivated rice.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FDNARES%2FDSU006

Genome sequencing reveals agronomically important loci in rice using MutMap.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FDNARES%2FDSU006

EST_GENOME: a program to align spliced DNA sequences to unspliced genomic DNA.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4131834

mRNA-Seq Reveals a Comprehensive Transcriptome Profile of Rice under Phosphate Stress

28 October 2018

1 reference

https://api.crossref.org/works/10.1093%2FDNARES%2FDSU006

21 January 2018

Identifiers

DOI

10.1093/DNARES/DSU006

1 reference

30 July 2017

1 reference

30 July 2017

1 reference