Scaffolding of long read assemblies using long range contact information (Q33901465)

29 July 2017

title

Scaffolding of long read assemblies using long range contact information (English)

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29 July 2017

2

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29 July 2017

Sergey Koren

3

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Derek M Bickhart

object named as

Derek Bickhart

series ordinal

4

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author name string

Jay Ghurye

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1

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29 July 2017

Chen-Shan Chin

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5

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29 July 2017

language of work or name

English

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publication date

12 July 2017

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29 July 2017

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29 July 2017

volume

18

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29 July 2017

issue

1

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29 July 2017

page(s)

527

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describes a project that uses

29 July 2017

MUMmer

object named as

MUMmer

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/s12864-017-3879-z

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cites work

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5 July 2018

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Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome

5 July 2018

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5 July 2018

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Chromosome-scale shotgun assembly using an in vitro method for long-range linkage

5 July 2018

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Haplotyping germline and cancer genomes with high-throughput linked-read sequencing

5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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High-quality genome (re)assembly using chromosomal contact data

5 July 2018

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One chromosome, one contig: complete microbial genomes from long-read sequencing and assembly

5 July 2018

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5 July 2018

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Illumina TruSeq synthetic long-reads empower de novo assembly and resolve complex, highly-repetitive transposable elements

5 July 2018

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High-throughput genome scaffolding from in vivo DNA interaction frequency

5 July 2018

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Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions

5 July 2018

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Reducing assembly complexity of microbial genomes with single-molecule sequencing

5 July 2018

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Optimal assembly for high throughput shotgun sequencing

5 July 2018

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Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

5 July 2018

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5 July 2018

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Finished bacterial genomes from shotgun sequence data

5 July 2018

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5 July 2018

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Topological domains in mammalian genomes identified by analysis of chromatin interactions

5 July 2018

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High-quality draft assemblies of mammalian genomes from massively parallel sequence data

5 July 2018

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A human genome structural variation sequencing resource reveals insights into mutational mechanisms

5 July 2018

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Assembly of large genomes using second-generation sequencing

5 July 2018

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A three-dimensional model of the yeast genome

5 July 2018

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De novo assembly of human genomes with massively parallel short read sequencing

5 July 2018

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Comprehensive mapping of long-range interactions reveals folding principles of the human genome

5 July 2018

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5 July 2018

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5 July 2018

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Real-time DNA sequencing from single polymerase molecules

5 July 2018

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Genome assembly forensics: finding the elusive mis-assembly

5 July 2018

1 reference

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The fragment assembly string graph

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5508778

Initial sequencing and comparative analysis of the mouse genome

5 July 2018

1 reference

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Alignment of whole genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5508778

Ordered restriction maps of Saccharomyces cerevisiae chromosomes constructed by optical mapping

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5508778

Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus).

5 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12864-017-3879-Z

A novel heuristic for local multiple alignment of interspersed DNA repeats

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12864-017-3879-Z

21 January 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/28701198

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S12864-017-3879-Z

1 reference

Dimensions Publication ID

29 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/s12864-017-3879-z

9 September 2019

1 reference

29 July 2017

1 reference