High-quality genome (re)assembly using chromosomal contact data (Q30612938)

19 October 2017

High-quality genome (re)assembly using chromosomal contact data (English)

1 reference

19 October 2017

5

1 reference

25 June 2017

Axel Cournac

3

0 references

Martial Marbouty

object named as

Martial Marbouty

2

0 references

Romain Koszul

object named as

Romain Koszul

11

0 references

Nancy Guillén

8

object named as

Nancy Guillén

1 reference

19 October 2017

4

Jean-François Flot

1 reference

19 October 2017

10

Christophe Zimmer

1 reference

19 October 2017

Hervé Marie-Nelly

1

1 reference

19 October 2017

Dante Poggi Parodi

6

1 reference

19 October 2017

Sylvie Syan

7

1 reference

19 October 2017

Antoine Margeot

9

1 reference

19 October 2017

language of work or name

English

0 references

publication date

17 December 2014

1 reference

19 October 2017

Nature Communications

1 reference

19 October 2017

5

1 reference

19 October 2017

5695

1 reference

Creative Commons Attribution 4.0 International

19 October 2017

start time

1 December 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Filling annotation gaps in yeast genomes using genome-wide contact maps

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284522

From a melt of rings to chromosome territories: the role of topological constraints in genome folding.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284522

Reconstructing complex regions of genomes using long-read sequencing technology

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284522

Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284522

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284522

Sequence assembly demystified

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284522

3C-based technologies to study the shape of the genome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284522

Genome interpretation and assembly-recent progress and next steps

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284522

Complexity of chromatin folding is captured by the strings and binders switch model

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284522

Normalization of a chromosomal contact map.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284522

Physical tethering and volume exclusion determine higher-order genome organization in budding yeast

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284522

Oncogene-mediated alterations in chromatin conformation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284522

Fast gapped-read alignment with Bowtie 2

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284522

Three-dimensional folding and functional organization principles of the Drosophila genome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284522

GAGE: A critical evaluation of genome assemblies and assembly algorithms

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284522

Genome structural variation discovery and genotyping

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284522

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284522

Limitations of next-generation genome sequence assembly

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284522

A three-dimensional model of the yeast genome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284522

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284522

Mechanisms that regulate localization of a DNA double-strand break to the nuclear periphery

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284522

Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284522

Genome sequence of Aedes aegypti, a major arbovirus vector

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284522

Yeast evolution and comparative genomics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284522

Eucaryotic genome evolution through the spontaneous duplication of large chromosomal segments

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284522

Capturing chromosome conformation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284522

Rearrangements of highly polymorphic regions near telomeres of Saccharomyces cerevisiae

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284522

Evolution of the dispersed SUC gene family of Saccharomyces by rearrangements of chromosome telomeres

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284522

Electrophoretic karyotyping of wild-type and mutant Trichoderma longibrachiatum (reesei) strains

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284522

Chromosomal and genetic analysis of the electrophoretic karyotype of Trichoderma reesei: mapping of the cellulase and xylanase genes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4284522

Full-length transcriptome assembly from RNA-Seq data without a reference genome

28 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS6695

Detection of structural variants and indels within exome data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS6695

Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus).

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS6695

High-throughput genome scaffolding from in vivo DNA interaction frequency

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS6695

Making contacts on a nucleic acid polymer

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS6695

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS6695

Genetic mapping of specific interactions between Aedes aegypti mosquitoes and dengue viruses

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS6695

PyCUDA and PyOpenCL: A scripting-based approach to GPU run-time code generation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS6695

A set of genetically diverged Saccharomyces cerevisiae strains with markerless deletions of multiple auxotrophic genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS6695

Inferential structure determination.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS6695

The Multiple-Try Method and Local Optimization in Metropolis Sampling

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS6695

A Predictive Computational Model of the Dynamic 3D Interphase Yeast Nucleus

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS6695

Chromosomal evolution in Saccharomyces

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS6695

Special issue: Trichoderma - from Basic Biology to Biotechnology

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25517223

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Assessing the complex architecture of polygenic traits in diverged yeast populations

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25517223

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NCOMMS6695

1 reference

Dimensions Publication ID

19 October 2017

0 references

0 references

1 reference

19 October 2017

1 reference