Comprehensive transcriptome analysis of the highly complex Pisum sativum genome using next generation sequencing (Q33898632)

29 July 2017

Comprehensive transcriptome analysis of the highly complex Pisum sativum genome using next generation sequencing (English)

1 reference

29 July 2017

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4

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29 July 2017

Susanne U Franssen

1

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Andrea Bräutigam

object named as

Andrea Bräutigam

series ordinal

3

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Andreas P.M. Weber

series ordinal

5

object named as

Andreas P M Weber

1 reference

29 July 2017

Roshan P Shrestha

2

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29 July 2017

language of work or name

English

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publication date

11 May 2011

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29 July 2017

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29 July 2017

12

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29 July 2017

227

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describes a project that uses

29 July 2017

MIRA

object named as

MIRA

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

massive parallel sequencing

1 reference

based on heuristic

inferred from title

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2164-12-227

0 references

cites work

Plastocyanin is encoded by a single-copy gene in the pea haploid genome

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Critical assessment of assembly strategies for non-model species mRNA-Seq data and application of next-generation sequencing to the comparison of C(3) and C(4) species.

5 July 2018

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Identification of Mendel's white flower character

5 July 2018

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Fast and accurate long-read alignment with Burrows-Wheeler transform

5 July 2018

1 reference

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Sequencing technologies - the next generation

5 July 2018

1 reference

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Global characterization of Artemisia annua glandular trichome transcriptome using 454 pyrosequencing

5 July 2018

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Comparative 454 pyrosequencing of transcripts from two olive genotypes during fruit development

5 July 2018

1 reference

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Comparison of next generation sequencing technologies for transcriptome characterization

5 July 2018

1 reference

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Mapping accuracy of short reads from massively parallel sequencing and the implications for quantitative expression profiling

5 July 2018

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Shedding light on an extremophile lifestyle through transcriptomics

5 July 2018

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The Sequence Alignment/Map format and SAMtools

5 July 2018

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Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (Castanea mollissima) in response to the chestnut blight infection

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224338

Rosid radiation and the rapid rise of angiosperm-dominated forests

5 July 2018

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Next is now: new technologies for sequencing of genomes, transcriptomes, and beyond

5 July 2018

1 reference

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RNA-Seq: a revolutionary tool for transcriptomics

5 July 2018

1 reference

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High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome

5 July 2018

1 reference

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Consequences of C4 differentiation for chloroplast membrane proteomes in maize mesophyll and bundle sheath cells.

5 July 2018

1 reference

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Low-coverage massively parallel pyrosequencing of cDNAs enables proteomics in non-model species: comparison of a species-specific database generated by pyrosequencing with databases from related species for proteome analysis of pea chloroplast envel

5 July 2018

1 reference

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Velvet: algorithms for de novo short read assembly using de Bruijn graphs

5 July 2018

1 reference

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Gene-based sequence diversity analysis of field pea (Pisum).

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224338

Repetitive DNA in the pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224338

The Arabidopsis Information Resource (TAIR): gene structure and function annotation.

5 July 2018

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PageMan: an interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments

5 July 2018

1 reference

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Gene discovery and annotation using LCM-454 transcriptome sequencing.

5 July 2018

1 reference

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The importance of maltose in transitory starch breakdown

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224338

Improved scoring of functional groups from gene expression data by decorrelating GO graph structure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224338

Legume comparative genomics: progress in phylogenetics and phylogenomics.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224338

5 July 2018

1 reference

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A gene expression map of Arabidopsis thaliana development

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224338

Leaf starch degradation comes out of the shadows

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224338

Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes

5 July 2018

1 reference

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LIGHT CONTROL OF SEEDLING DEVELOPMENT.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224338

MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224338

TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets

5 July 2018

1 reference

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Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

5 July 2018

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Gene ontology: tool for the unification of biology

5 July 2018

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CAP3: A DNA sequence assembly program

5 July 2018

1 reference

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Nitrate regulation of metabolism and growth

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224338

A high-conductance solute channel in the chloroplastic outer envelope from Pea.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224338

Mendel's stem length gene (Le) encodes a gibberellin 3 beta-hydroxylase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224338

Mendel's dwarfing gene: cDNAs from the Le alleles and function of the expressed proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224338

Starch branching enzymes belonging to distinct enzyme families are differentially expressed during pea embryo development.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224338

Molecular cloning and characterization of a gene encoding pea cytosolic ascorbate peroxidase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224338

Comparative proteomics of chloroplast envelopes from C3 and C4 plants reveals specific adaptations of the plastid envelope to C4 photosynthesis and candidate proteins required for maintaining C4 metabolite fluxes.

5 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-227

Expression of genes associated with carbohydrate metabolism in cotton stems and roots

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-227

A gene expression signature shared by human mature oocytes and embryonic stem cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-227

The pea gene LH encodes ent-kaurene oxidase

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-227

The single-copy gene encoding high-mobility-group protein HMG-I/Y from pea contains a single intron and is expressed in all organs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-227

Characterization of a single copy gene encoding ferredoxin I from pea.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-227

Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-227

Light control of Arabidopsis development entails coordinated regulation of genome expression and cellular pathways.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-227

Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-227

An mRNA blueprint for C4 photosynthesis derived from comparative transcriptomics of closely related C3 and C4 species

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-227

Comparative mapping between Medicago sativa and Pisum sativum

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21569327

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-12-227

1 reference

Dimensions Publication ID

29 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-12-227

9 September 2019

1 reference

29 July 2017

1 reference