The substrate-driven transition to an inward-facing conformation in the functional mechanism of the dopamine transporter (Q33813126)

29 July 2017

The substrate-driven transition to an inward-facing conformation in the functional mechanism of the dopamine transporter (English)

1 reference

29 July 2017

0 references

Jonathan A Javitch

2

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author name string

Jufang Shan

series ordinal

1

1 reference

29 July 2017

Lei Shi

series ordinal

3

1 reference

29 July 2017

Harel Weinstein

series ordinal

4

1 reference

29 July 2017

language of work or name

English

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publication date

27 January 2011

1 reference

29 July 2017

1 reference

29 July 2017

6

1 reference

29 July 2017

1

1 reference

29 July 2017

e16350

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Creative Commons Attribution 4.0 International

29 July 2017

start time

27 January 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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4 July 2018

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Simulation of spontaneous substrate binding revealing the binding pathway and mechanism and initial conformational response of GlpT.

4 July 2018

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The rocking bundle: a mechanism for ion-coupled solute flux by symmetrical transporters.

4 July 2018

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Inward-facing conformation of glutamate transporters as revealed by their inverted-topology structural repeats.

4 July 2018

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Structure and function of Na(+)-symporters with inverted repeats

4 July 2018

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Unlocking the molecular secrets of sodium-coupled transporters.

4 July 2018

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Antidepressant specificity of serotonin transporter suggested by three LeuT-SSRI structures

4 July 2018

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Molecular dynamics simulations of membrane channels and transporters

4 July 2018

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Binding of an octylglucoside detergent molecule in the second substrate (S2) site of LeuT establishes an inhibitor-bound conformation

4 July 2018

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Molecular simulations elucidate the substrate translocation pathway in a glutamate transporter

4 July 2018

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Transmembrane domain 8 of the {gamma}-aminobutyric acid transporter GAT-1 lines a cytoplasmic accessibility pathway into its binding pocket

4 July 2018

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A juxtamembrane mutation in the N terminus of the dopamine transporter induces preference for an inward-facing conformation.

4 July 2018

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A competitive inhibitor traps LeuT in an open-to-out conformation

4 July 2018

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Review. The molecular logic of sodium-coupled neurotransmitter transporters

4 July 2018

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The binding sites for cocaine and dopamine in the dopamine transporter overlap

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3029329

An intracellular interaction network regulates conformational transitions in the dopamine transporter.

4 July 2018

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Control of ion selectivity in LeuT: two Na+ binding sites with two different mechanisms

4 July 2018

1 reference

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Substrate binding and formation of an occluded state in the leucine transporter

4 July 2018

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Mechanism of chloride interaction with neurotransmitter:sodium symporters.

4 July 2018

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How dopamine transporter interacts with dopamine: insights from molecular modeling and simulation

4 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3029329

LeuT-desipramine structure reveals how antidepressants block neurotransmitter reuptake

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3029329

Antidepressant binding site in a bacterial homologue of neurotransmitter transporters

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3029329

Identification of a chloride ion binding site in Na+/Cl -dependent transporters.

4 July 2018

1 reference

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Sugar transport across lactose permease probed by steered molecular dynamics

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3029329

State-dependent conformations of the translocation pathway in the tyrosine transporter Tyt1, a novel neurotransmitter:sodium symporter from Fusobacterium nucleatum.

4 July 2018

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Gaussian-weighted RMSD superposition of proteins: a structural comparison for flexible proteins and predicted protein structures

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3029329

Multiple Alignment of protein structures and sequences for VMD.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3029329

Scalable molecular dynamics with NAMD

4 July 2018

1 reference

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A pincer-like configuration of TM2 in the human dopamine transporter is responsible for indirect effects on cocaine binding.

4 July 2018

1 reference

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Substituted cysteine accessibility of the third transmembrane domain of the creatine transporter: defining a transport pathway

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3029329

Crystal structure of a bacterial homologue of Na+/Cl--dependent neurotransmitter transporters

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3029329

Cysteine-scanning mutagenesis of serotonin transporter intracellular loop 2 suggests an alpha-helical conformation

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3029329

How did the neurotransmitter cross the bilayer? A closer view

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3029329

Structure of a glutamate transporter homologue from Pyrococcus horikoshii

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3029329

The aqueous accessibility in the external half of transmembrane domain I of the GABA transporter GAT-1 Is modulated by its ligands

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3029329

Role of proline residues in the expression and function of the human noradrenaline transporter

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3029329

Probing conformational changes in neurotransmitter transporters: a structural context

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3029329

Structure and mechanism of the lactose permease of Escherichia coli

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3029329

Phosphatidylinositol 3-kinase, protein kinase C, and MEK1/2 kinase regulation of dopamine transporters (DAT) require N-terminal DAT phosphoacceptor sites

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3029329

Evolutionarily conserved networks of residues mediate allosteric communication in proteins

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3029329

Beta2 adrenergic receptor activation. Modulation of the proline kink in transmembrane 6 by a rotamer toggle switch

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3029329

Generation of an activating Zn(2+) switch in the dopamine transporter: mutation of an intracellular tyrosine constitutively alters the conformational equilibrium of the transport cycle

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3029329

Development and current status of the CHARMM force field for nucleic acids.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3029329

Steered molecular dynamics and mechanical functions of proteins

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3029329

Hinges, swivels and switches: the role of prolines in signalling via transmembrane alpha-helices

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3029329

Evolutionarily conserved pathways of energetic connectivity in protein families

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3029329

The rat serotonin transporter: identification of cysteine residues important for substrate transport

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3029329

VMD: visual molecular dynamics

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3029329

Dopamine transporter mutants selectively enhance MPP+ transport

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3029329

Simple Allosteric Model for Membrane Pumps

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3029329

Dopamine transporter site-directed mutations differentially alter substrate transport and cocaine binding

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3029329

Multiple protein sequence alignment from tertiary structure comparison: assignment of global and residue confidence levels

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3029329

Defining proximity relationships in the tertiary structure of the dopamine transporter. Identification of a conserved glutamic acid as a third coordinate in the endogenous Zn(2+)-binding site.

4 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016350

Evidence for distinct sodium-, dopamine-, and cocaine-dependent conformational changes in transmembrane segments 7 and 8 of the dopamine transporter

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016350

Dopamine efflux via wild-type and mutant dopamine transporters: alanine substitution for proline-572 enhances efflux and reduces dependence on extracellular dopamine, sodium and chloride concentrations

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016350

Proline mutations induce negative-dosage effects on uptake velocity of the dopamine transporter

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016350

Roles of transmembrane domain 2 and the first intracellular loop in human noradrenaline transporter function: pharmacological and SCAM analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016350

The major amino acid transporter superfamily has a similar core structure as Na+-galactose and Na+-leucine transporters

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016350

Ion-releasing state of a secondary membrane transporter

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016350

The mechanism of a neurotransmitter:sodium symporter--inward release of Na+ and substrate is triggered by substrate in a second binding site

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016350

Molecular mechanism of substrate specificity in the bacterial neutral amino acid transporter LeuT.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016350

Molecular dynamics of leucine and dopamine transporter proteins in a model cell membrane lipid bilayer

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016350

Dopamine transporter comparative molecular modeling and binding site prediction using the LeuT(Aa) leucine transporter as a template.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016350

Identification of intracellular residues in the dopamine transporter critical for regulation of transporter conformation and cocaine binding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016350

Intramolecular signaling pathways revealed by modeling anisotropic thermal diffusion

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016350

Activation of the cannabinoid CB1 receptor may involve a W6 48/F3 36 rotamer toggle switch

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016350

Structural differences between mesophilic, moderately thermophilic and extremely thermophilic protein subunits: results of a comprehensive survey

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016350

Prokink: a protocol for numerical evaluation of helix distortions by proline.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016350

Simulaid: a simulation facilitator and analysis program

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016350

Engineering of metal-ion sites as distance constraints in structural and functional analysis of 7TM receptors

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016350

Bioenergetics of neurotransmitter transport.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016350

Serotonin and cocaine-sensitive inactivation of human serotonin transporters by methanethiosulfonates targeted to transmembrane domain I.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016350

Analysis of transmembrane domain 2 of rat serotonin transporter by cysteine scanning mutagenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016350

Critical amino acid residues in transmembrane span 7 of the serotonin transporter identified by random mutagenesis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016350

Functional role of critical stripe residues in transmembrane span 7 of the serotonin transporter. Effects of Na+, Li+, and methanethiosulfonate reagents

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016350

The interaction of methylphenidate and benztropine with the dopamine transporter is different than other substrates and ligands

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016350

Pharmacological properties of the naturally occurring Ala(457)Pro variant of the human norepinephrine transporter

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016350

Cysteine-scanning mutagenesis of the fifth external loop of serotonin transporter

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016350

High- and low-affinity binding of S-citalopram to the human serotonin transporter mutated at 20 putatively important amino acid positions

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016350

Dopamine transporter transmembrane domain polar mutants: DeltaG and DeltaDeltaG values implicate regions important for transporter functions.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3029329

Dopamine transporter proline mutations influence dopamine uptake, cocaine analog recognition, and expression.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3029329

The accessible surface area and stability of oligomeric proteins

30 October 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016350

Probing structure of neurotransmitter transporters by substituted-cysteine accessibility method

21 January 2018

1 reference

12 December 2020

Effects of serine mutations in transmembrane domain 7 of the human norepinephrine transporter on substrate binding and transport

1 reference

12 December 2020

The reactivity of the gamma-aminobutyric acid transporter GAT-1 toward sulfhydryl reagents is conformationally sensitive. Identification of a major target residue

1 reference

12 December 2020

Identification of a lithium interaction site in the gamma-aminobutyric acid (GABA) transporter GAT-1

1 reference

12 December 2020

A comprehensive structure-based alignment of prokaryotic and eukaryotic neurotransmitter/Na+ symporters (NSS) aids in the use of the LeuT structure to probe NSS structure and function

1 reference

12 December 2020

Structural probing of a microdomain in the dopamine transporter by engineering of artificial Zn2+ binding sites

1 reference

12 December 2020

Three-dimensional representations of G protein-coupled receptor structures and mechanisms

1 reference

12 December 2020

10.1371/JOURNAL.PONE.0016350

Identifiers

DOI

1 reference

29 July 2017

0 references

1 reference

29 July 2017

1 reference