OrthoInspector: comprehensive orthology analysis and visual exploration (Q33789549)

29 July 2017

1 reference

title

OrthoInspector: comprehensive orthology analysis and visual exploration (English)

1 reference

29 July 2017

4

Odile Lecompte

1 reference

29 July 2017

Benjamin Linard

1

1 reference

PubMed ID

21219603

29 July 2017

Julie D Thompson

series ordinal

2

1 reference

PubMed ID

21219603

29 July 2017

Olivier Poch

series ordinal

3

1 reference

29 July 2017

10 January 2011

1 reference

29 July 2017

1 reference

29 July 2017

12

1 reference

29 July 2017

11

1 reference

Creative Commons Attribution 2.0 Generic

29 July 2017

start time

10 January 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

describes a project that uses

SQL

1 reference

26 June 2022

https://europepmc.org/article/PMC/PMC3024942

based on heuristic

inferred from PubMed Central ID database lookup

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-12-11

0 references

cites work

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1 reference

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2x genomes--depth does matter

4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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PLAST: parallel local alignment search tool for database comparison

4 July 2018

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The flowering world: a tale of duplications

4 July 2018

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Evolutionary constraints on structural similarity in orthologs and paralogs

4 July 2018

1 reference

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Lineage-specific biology revealed by a finished genome assembly of the mouse

4 July 2018

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Berkeley PHOG: PhyloFacts orthology group prediction web server

4 July 2018

1 reference

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Phylogenetic and functional assessment of orthologs inference projects and methods

4 July 2018

1 reference

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Algorithm of OMA for large-scale orthology inference

4 July 2018

1 reference

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Large-scale assignment of orthology: back to phylogenetics?

4 July 2018

1 reference

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4 July 2018

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The quest for orthologs: finding the corresponding gene across genomes

4 July 2018

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4 July 2018

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4 July 2018

1 reference

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The 2R hypothesis: an update

4 July 2018

1 reference

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An ancient genome duplication contributed to the abundance of metabolic genes in the moss Physcomitrella patens

4 July 2018

1 reference

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4 July 2018

1 reference

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Assessing performance of orthology detection strategies applied to eukaryotic genomes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3024942

4 July 2018

1 reference

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MBGD: a platform for microbial comparative genomics based on the automated construction of orthologous groups

4 July 2018

1 reference

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Functional classification using phylogenomic inference

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3024942

Benchmarking ortholog identification methods using functional genomics data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3024942

The dictyostelium kinome--analysis of the protein kinases from a simple model organism.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3024942

OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3024942

Orthologs, paralogs, and evolutionary genomics

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3024942

NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3024942

Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype

4 July 2018

1 reference

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The mouse kinome: discovery and comparative genomics of all mouse protein kinases

4 July 2018

1 reference

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4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3024942

The COG database: an updated version includes eukaryotes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3024942

The protein kinase complement of the human genome

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3024942

Evolution of protein kinase signaling from yeast to man

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3024942

The protein kinases of Caenorhabditis elegans: a model for signal transduction in multicellular organisms

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3024942

Phylogenetic tests of the hypothesis of block duplication of homologous genes on human chromosomes 6, 9, and 1.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3024942

The protein kinases of budding yeast: six score and more

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3024942

SRS: information retrieval system for molecular biology data banks

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3024942

Distinguishing Homologous from Analogous Proteins

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3024942

Décrypthon grid - grid resources dedicated to neuromuscular disorders.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3024942

PtdIns5P regulation through evolution: roles in membrane trafficking?

30 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21219603

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-12-11

1 reference

journals/bmcbi/LinardTPL11

29 July 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

29 July 2017

1 reference

PubMed ID

21219603