Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe (Q33788085)

29 July 2017

Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe (English)

1 reference

29 July 2017

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28

Paul Kellam

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Ben Berkhout

27

Barbara Gunsenheimer-Bartmeyer

Ben Berkhout

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16

Barbara Gunsenheimer-Bartmeyer

1 reference

29 July 2017

25

Ard van Sighem

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29 July 2017

20

Oliver Laeyendecker

1 reference

29 July 2017

Astrid Gall

4

0 references

Roger Kouyos

Roger Kouyos

19

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Jacques Fellay

Jacques Fellay

12

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Matti Ristola

Matti Ristola

24

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Kholoud Porter

Kholoud Porter

23

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Christophe Fraser

Christophe Fraser

30

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Huldrych F Günthard

Huldrych F Günthard

17

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Jan Albert

10

Jan Albert

1 reference

29 July 2017

2

Chris Wymant

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29 July 2017

29

Peter Reiss

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29 July 2017

5

Margreet Bakker

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29 July 2017

3

Marion Cornelissen

1 reference

29 July 2017

26

Guido Vanham

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29 July 2017

6

Daniela Bezemer

1 reference

29 July 2017

François Blanquart

1

1 reference

29 July 2017

Matthew Hall

7

1 reference

29 July 2017

Mariska Hillebregt

8

1 reference

29 July 2017

Swee Hoe Ong

9

1 reference

29 July 2017

Norbert Bannert

11

1 reference

29 July 2017

Katrien Fransen

13

1 reference

29 July 2017

Annabelle J Gourlay

14

1 reference

29 July 2017

M Kate Grabowski

15

1 reference

29 July 2017

Pia Kivelä

18

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29 July 2017

Kirsi Liitsola

21

1 reference

29 July 2017

Laurence Meyer

22

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29 July 2017

BEEHIVE collaboration

31

1 reference

29 July 2017

language of work or name

English

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publication date

12 June 2017

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29 July 2017

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29 July 2017

15

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29 July 2017

e2001855

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29 July 2017

6

1 reference

Creative Commons CC0 License

29 July 2017

start time

12 June 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted, dedicated to the public domain by copyright holder

0 references

cites work

METHODS FOR THE ANALYSIS OF COMPARATIVE DATA IN EVOLUTIONARY BIOLOGY.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

Estimating the Respective Contributions of Human and Viral Genetic Variation to HIV Control

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

A transmission-virulence evolutionary trade-off explains attenuation of HIV-1 in Uganda

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

Prospective Study of Acute HIV-1 Infection in Adults in East Africa and Thailand

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

Potential Pitfalls in Estimating Viral Load Heritability

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

Temporal trends in prognostic markers of HIV-1 virulence and transmissibility: an observational cohort study

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

ExaML version 3: a tool for phylogenomic analyses on supercomputers

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

IVA: accurate de novo assembly of RNA virus genomes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

Immuno-epidemiological modeling of HIV-1 predicts high heritability of the set-point virus load, while selection for CTL escape dominates virulence evolution

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

Impact of HLA-driven HIV adaptation on virulence in populations of high HIV seroprevalence

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

COMET: adaptive context-based modeling for ultrafast HIV-1 subtype identification.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

The contribution of viral genotype to plasma viral set-point in HIV infection

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

Trimmomatic: a flexible trimmer for Illumina sequence data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

Virulence and pathogenesis of HIV-1 infection: an evolutionary perspective

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

How effectively can HIV phylogenies be used to measure heritability?

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

Inferring the source of transmission with phylogenetic data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

Cumulative impact of host and viral factors on HIV-1 viral-load control during early infection

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

Partner characteristics predicting HIV-1 set point in sexually acquired HIV-1 among African seroconverters

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

Correlates of protective cellular immunity revealed by analysis of population-level immune escape pathways in HIV-1.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

Universal amplification, next-generation sequencing, and assembly of HIV-1 genomes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

2011 update of the drug resistance mutations in HIV-1.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

Is the virulence of HIV changing? A meta-analysis of trends in prognostic markers of HIV disease progression and transmission

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

Transmission selects for HIV-1 strains of intermediate virulence: a modelling approach

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

Phylogenetic approach reveals that virus genotype largely determines HIV set-point viral load

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

Effect of treating co-infections on HIV-1 viral load: a systematic review

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

HIV-1 transmitting couples have similar viral load set-points in Rakai, Uganda

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

Performance of the new Roche Cobas AmpliPrep-Cobas TaqMan version 2.0 human immunodeficiency virus type 1 assay.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

The Sequence Alignment/Map format and SAMtools

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

The emergence of HIV/AIDS in the Americas and beyond

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

Variation in HIV-1 set-point viral load: epidemiological analysis and an evolutionary hypothesis

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

The HIV RNA setpoint theory revisited

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

A whole-genome association study of major determinants for host control of HIV-1

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

Predictive value of plasma HIV RNA level on rate of CD4 T-cell decline in untreated HIV infection

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

Testing for phylogenetic signal in comparative data: behavioral traits are more labile

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

HIV-1 infection in rural Africa: is there a difference in median time to AIDS and survival compared with that in industrialized countries?

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

Amino acid substitutions in Gag protein at non-cleavage sites are indispensable for the development of a high multitude of HIV-1 resistance against protease inhibitors

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

Unprecedented degree of human immunodeficiency virus type 1 (HIV-1) group M genetic diversity in the Democratic Republic of Congo suggests that the HIV-1 pandemic originated in Central Africa.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

Viral load and heterosexual transmission of human immunodeficiency virus type 1. Rakai Project Study Group

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

Inferring the historical patterns of biological evolution

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

Prognosis in HIV-1 infection predicted by the quantity of virus in plasma

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

Acquired immunodeficiency syndrome (AIDS)-free time after human immunodeficiency virus type 1 (HIV-1) seroconversion in homosexual men. Multicenter AIDS Cohort Study Group

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

Basic local alignment search tool

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5467800

Crystal structure of an FIV/HIV chimeric protease complexed with the broad-based inhibitor, TL-3

4 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.2001855

Phylogenies and the Comparative Method

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.2001855

STABILIZING SELECTION AND THE COMPARATIVE ANALYSIS OF ADAPTATION.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.2001855

A linear-time algorithm for Gaussian and non-Gaussian trait evolution models.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.2001855

HIV RNA levels in transmission sources only weakly predict plasma viral load in recipients

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.2001855

Differences in HIV RNA levels before the initiation of antiretroviral therapy among 1864 individuals with known HIV-1 seroconversion dates

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.2001855

The puzzle of HIV-1 subtypes in Africa

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28604782

12 December 2020

inferred from PubMed ID database lookup

Long-term survivors with HIV-1 infection: incubation period and longitudinal patterns of CD4+ lymphocytes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28604782

12 December 2020

inferred from PubMed ID database lookup

Prognostic value of HIV-1 RNA, CD4 cell count, and CD4 Cell count slope for progression to AIDS and death in untreated HIV-1 infection

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28604782

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1371/JOURNAL.PBIO.2001855

1 reference

release_suo5h5aopfbv7ekpksrwb7q5s4

29 July 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/suo5h5aopfbv7ekpksrwb7q5s4

24 November 2022

mapped directly with Wikidata item

PMCID

5467800

1 reference

29 July 2017

1 reference