Towards universal structure-based prediction of class II MHC epitopes for diverse allotypes (Q33781091)

29 July 2017

Towards universal structure-based prediction of class II MHC epitopes for diverse allotypes (English)

1 reference

29 July 2017

Andrew J Bordner

1

1 reference

PubMed ID

21187956

29 July 2017

language of work or name

English

0 references

publication date

20 December 2010

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29 July 2017

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29 July 2017

5

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29 July 2017

12

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29 July 2017

e14383

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Creative Commons Attribution 4.0 International

29 July 2017

start time

20 December 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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Limitations of Ab initio predictions of peptide binding to MHC class II molecules

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Five HLA-DP molecules frequently expressed in the worldwide human population share a common HLA supertypic binding specificity

4 July 2018

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Immunoregulation by targeting T cells in the treatment of allergy and asthma

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Modeling the bound conformation of Pemphigus vulgaris-associated peptides to MHC Class II DR and DQ alleles

4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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Competition between two MHC binding registers in a single peptide processed from myelin basic protein influences tolerance and susceptibility to autoimmunity.

4 July 2018

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Autoreactive T cells can be protected from tolerance induction through competition by flanking determinants for access to class II MHC.

4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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Mutations changing the kinetics of class II MHC peptide exchange

4 July 2018

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Complex HLA-DR and -DQ interactions confer risk of narcolepsy-cataplexy in three ethnic groups

4 July 2018

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Immunoglobulin E-independent major histocompatibility complex-restricted T cell peptide epitope-induced late asthmatic reactions

4 July 2018

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Pair potentials for protein folding: choice of reference states and sensitivity of predicted native states to variations in the interaction schemes

4 July 2018

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Successful immunotherapy with T-cell epitope peptides of bee venom phospholipase A2 induces specific T-cell anergy in patients allergic to bee venom.

4 July 2018

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Effects of peptide therapy on ex vivo T-cell responses

4 July 2018

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The class II MHC protein HLA-DR1 in complex with an endogenous peptide: implications for the structural basis of the specificity of peptide binding

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004863

The nature of cryptic epitopes within the self-antigen myelin basic protein.

4 July 2018

1 reference

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The multiple sclerosis- and narcolepsy-associated HLA class II haplotype includes the DRB5*0101 allele

4 July 2018

1 reference

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Biased probability Monte Carlo conformational searches and electrostatic calculations for peptides and proteins

4 July 2018

1 reference

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Crystal structure of the human class II MHC protein HLA-DR1 complexed with an influenza virus peptide

4 July 2018

1 reference

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HLA-DQ beta gene contributes to susceptibility and resistance to insulin-dependent diabetes mellitus

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004863

Evidence for a primary association of celiac disease to a particular HLA-DQ alpha/beta heterodimer

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004863

HLA-DR4 subtype frequencies in rheumatoid arthritis indicate that DRB1 is the major susceptibility locus within the HLA class II region

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004863

Analysis of HLA-DQ genotypes and susceptibility in insulin-dependent diabetes mellitus

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004863

DQ (rather than DR) gene marks susceptibility to narcolepsy

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004863

Toward prediction of class II mouse major histocompatibility complex peptide binding affinity: in silico bioinformatic evaluation using partial least squares, a robust multivariate statistical technique.

4 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014383

Improved prediction of MHC class I and class II epitopes using a novel Gibbs sampling approach.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014383

MHC-BPS: MHC-binder prediction server for identifying peptides of flexible lengths from sequence-derived physicochemical properties.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014383

Application of machine learning techniques in predicting MHC binders.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014383

In silico prediction of peptide-MHC binding affinity using SVRMHC.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014383

Generation of tissue-specific and promiscuous HLA ligand databases using DNA microarrays and virtual HLA class II matrices

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014383

A novel predictive technique for the MHC class II peptide-binding interaction

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014383

Predicting peptide binding to MHC pockets via molecular modeling, implicit solvation, and global optimization

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014383

Prediction of HLA-DQ3.2beta ligands: evidence of multiple registers in class II binding peptides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014383

Ab initio prediction of peptide-MHC binding geometry for diverse class I MHC allotypes

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014383

Influence of a dominant cryptic epitope on autoimmune T cell tolerance

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014383

Modeling MHC class II molecules and their bound peptides as expressed at the cell surface

21 January 2018

1 reference

12 December 2020

Ovalbumin(323-339) peptide binds to the major histocompatibility complex class II I-A(d) protein using two functionally distinct registers

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Allergen-derived long peptide immunotherapy down-regulates specific IgE response and protects from anaphylaxis

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12 December 2020

Effect of T-cell peptides derived from Fel d 1 on allergic reactions and cytokine production in patients sensitive to cats: a randomised controlled trial

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Random Forests

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https://ui.adsabs.harvard.edu/abs/2001MachL..45....5B/citations

Identifiers

DOI

10.1371/JOURNAL.PONE.0014383

1 reference

29 July 2017

0 references

1 reference

29 July 2017

1 reference

PubMed ID

21187956