Quantitative predictions of peptide binding to any HLA-DR molecule of known sequence: NetMHCIIpan (Q33349439)

26 July 2017

Quantitative predictions of peptide binding to any HLA-DR molecule of known sequence: NetMHCIIpan (English)

1 reference

26 July 2017

Morten Nielsen

1

0 references

Alessandro Sette

series ordinal

5

object named as

Alessandro Sette

1 reference

26 July 2017

4

Bjoern Peters

1 reference

26 July 2017

Ole Lund

8

0 references

Claus Lundegaard

series ordinal

2

object named as

Claus Lundegaard

1 reference

26 July 2017

7

Søren Buus

1 reference

PubMed ID

18604266

26 July 2017

Thomas Holberg Blicher

series ordinal

3

object named as

Thomas Blicher

1 reference

26 July 2017

6

Sune Justesen

1 reference

26 July 2017

4 July 2008

1 reference

PLOS Computational Biology

26 July 2017

1 reference

26 July 2017

4

1 reference

26 July 2017

7

1 reference

26 July 2017

e1000107

1 reference

Creative Commons Attribution 4.0 International

26 July 2017

start time

4 July 2008

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Predicting peptides binding to MHC class II molecules using multi-objective evolutionary algorithms

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NetMHCpan, a method for quantitative predictions of peptide binding to any HLA-A and -B locus protein of known sequence

21 June 2018

1 reference

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Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method

21 June 2018

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21 June 2018

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Predicting Class II MHC-Peptide binding: a kernel based approach using similarity scores

21 June 2018

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SVRMHC prediction server for MHC-binding peptides

21 June 2018

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Prediction of MHC-binding peptides of flexible lengths from sequence-derived structural and physicochemical properties

21 June 2018

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A community resource benchmarking predictions of peptide binding to MHC-I molecules

21 June 2018

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21 June 2018

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21 June 2018

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Prediction of MHC class II binding peptides based on an iterative learning model

21 June 2018

1 reference

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Selecting informative data for developing peptide-MHC binding predictors using a query by committee approach.

21 June 2018

1 reference

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New allele frequency database: http://www.allelefrequencies.net

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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IMGT/HLA Database--a sequence database for the human major histocompatibility complex

21 June 2018

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SYFPEITHI: database for MHC ligands and peptide motifs

21 June 2018

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Immunodominance in major histocompatibility complex class I-restricted T lymphocyte responses

21 June 2018

1 reference

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Expression and crystallization of the complex of HLA-DR2 (DRA, DRB1*1501) and an immunodominant peptide of human myelin basic protein

21 June 2018

1 reference

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Antigen presentation by MHC class II molecules: invariant chain function, protein trafficking, and the molecular basis of diverse determinant capture

21 June 2018

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Development of high potency universal DR-restricted helper epitopes by modification of high affinity DR-blocking peptides.

21 June 2018

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Measuring the accuracy of diagnostic systems

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2430535

Structural requirements for the interaction between peptide antigens and I-Ed molecules

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2430535

Amino acid substitution matrices from protein blocks

21 June 2018

1 reference

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Selection of representative protein data sets

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2430535

Modeling the adaptive immune system: predictions and simulations.

21 June 2018

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Peptide length-based prediction of peptide-MHC class II binding.

31 October 2018

1 reference

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Hidden Markov model-based prediction of antigenic peptides that interact with MHC class II molecules.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2430535

Prediction of MHC class II binders using the ant colony search strategy.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2430535

Automated generation and evaluation of specific MHC binding predictive tools: ARB matrix applications.

31 October 2018

1 reference

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A roadmap for the immunomics of category A-C pathogens

31 October 2018

1 reference

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Definition of supertypes for HLA molecules using clustering of specificity matrices.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2430535

Improved prediction of MHC class I and class II epitopes using a novel Gibbs sampling approach.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2430535

Towards the in silico identification of class II restricted T-cell epitopes: a partial least squares iterative self-consistent algorithm for affinity prediction.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2430535

ProPred: prediction of HLA-DR binding sites.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2430535

Prediction of MHC class II-binding peptides using an evolutionary algorithm and artificial neural network.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2430535

Generation of tissue-specific and promiscuous HLA ligand databases using DNA microarrays and virtual HLA class II matrices

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2430535

Establishment of a quantitative ELISA capable of determining peptide - MHC class I interaction

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18604266

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.1000107

1 reference

journals/ploscb/NielsenLBPSJBL08

26 July 2017

1 reference

DBLP Dataset 2021-01-02

release_neyhxghf5bfwrav4z76dsrurgm

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/neyhxghf5bfwrav4z76dsrurgm

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMCID

2430535

1 reference

26 July 2017

1 reference

PubMed ID

18604266