Whole-genome reconstruction and mutational signatures in gastric cancer. (Q33751188)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

title

Whole-genome reconstruction and mutational signatures in gastric cancer (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

main subject

whole genome sequencing

1 reference

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Niantao Deng

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Kartiki V Desai

19

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Chiea Chuen Khor

20

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Martin L. Hibberd

21

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Bin Tean Teh

25

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Jimmy So

29

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Richie Soong

31

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

W-K Sung

32

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Steven G. Rozen

34

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

22

Atif Shahab

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

author name string

Niranjan Nagarajan

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Denis Bertrand

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Zhi Jiang Zang

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Fei Yao

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Pierre-Étienne Jacques

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Audrey S M Teo

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Ioana Cutcutache

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Zhenshui Zhang

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Wah Heng Lee

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Yee Yen Sia

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Song Gao

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Pramila N Ariyaratne

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Andrea Ho

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Xing Yi Woo

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Lavanya Veeravali

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Jaideepraj Rao

23

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Mengchu Wu

24

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Feng Zhu

26

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Sze Yung Chin

27

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Brendan Pang

28

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Xiaoan Ruan

35

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Khay Guan Yeoh

36

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Patrick B O Tan

37

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Yijun Ruan

38

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Axel M Hillmer

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Guillaume Bourque

30

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Bin Tean Teh

33

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

publication date

13 December 2012

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

volume

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

page(s)

R115

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

issue

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

20 February 2020

MUMmer

object named as

MUMmer

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/gb-2012-13-12-r115

0 references

cites work

A comprehensive survey of genomic alterations in gastric cancer reveals systematic patterns of molecular exclusivity and co-occurrence among distinct therapeutic targets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4056366

Exome sequencing identifies frequent mutation of ARID1A in molecular subtypes of gastric cancer

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4056366

Opera: reconstructing optimal genomic scaffolds with high-throughput paired-end sequences

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4056366

Whole-genome sequencing identifies recurrent mutations in chronic lymphocytic leukaemia

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4056366

Comprehensive long-span paired-end-tag mapping reveals characteristic patterns of structural variations in epithelial cancer genomes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4056366

Activation-induced cytidine deaminase targets DNA at sites of RNA polymerase II stalling by interaction with Spt5

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4056366

Helicobacter pylori-induced activation-induced cytidine deaminase expression and carcinogenesis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4056366

The mutation spectrum revealed by paired genome sequences from a lung cancer patient

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4056366

Risk factors in gastric cancer

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4056366

Fast and accurate long-read alignment with Burrows-Wheeler transform

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4056366

p53 suppresses structural chromosome instability after mitotic arrest in human cells

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4056366

De novo assembly of human genomes with massively parallel short read sequencing

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4056366

A small-cell lung cancer genome with complex signatures of tobacco exposure

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4056366

A comprehensive catalogue of somatic mutations from a human cancer genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4056366

SelTarbase, a database of human mononucleotide-microsatellite mutations and their potential impact to tumorigenesis and immunology

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4056366

Sensitive and accurate detection of copy number variants using read depth of coverage

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4056366

The Sequence Alignment/Map format and SAMtools

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4056366

Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4056366

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4056366

Mechanisms for human genomic rearrangements

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4056366

Screening for aneuploidy in first and second trimesters: is there an optimal paradigm?

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4056366

8-nitroguanine, a product of nitrative DNA damage caused by reactive nitrogen species: formation, occurrence, and implications in inflammation and carcinogenesis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4056366

Expression of seven main Rho family members in gastric carcinoma

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4056366

Versatile and open software for comparing large genomes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4056366

SIFT: Predicting amino acid changes that affect protein function

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4056366

Messenger RNA editing in mammals: new members of the APOBEC family seeking roles in the family business

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4056366

14 July 2018

RHO-GTPases and cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4056366

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4056366

Genetic instabilities in human cancers

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4056366

Do microsatellite instability profiles really differ between colorectal and endometrial tumors?

14 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FGB-2012-13-12-R115

Loss of activin receptor type 2 protein expression in microsatellite unstable colon cancers

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4056366

Evidence of selection for clones having genetic inactivation of the activin A type II receptor (ACVR2) gene in gastrointestinal cancers.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4056366

Exome sequencing of gastric adenocarcinoma identifies recurrent somatic mutations in cell adhesion and chromatin remodeling genes

30 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23237666

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/GB-2012-13-12-R115

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

20 February 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237666%20AND%20SRC:MED&resulttype=core&format=json