CNAseg--a novel framework for identification of copy number changes in cancer from second-generation sequencing data. (Q33725108)

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15 February 2020

title

CNAseg--a novel framework for identification of copy number changes in cancer from second-generation sequencing data (English)

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15 February 2020

3

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15 February 2020

author name string

Sergii Ivakhno

1

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15 February 2020

Tom Royce

2

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15 February 2020

Dirk J Evers

4

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15 February 2020

R Keira Cheetham

5

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15 February 2020

Simon Tavaré

6

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15 February 2020

language of work or name

English

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publication date

21 October 2010

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15 February 2020

number of pages

8

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based on heuristic

inferred from page(s)

published in

Bioinformatics

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15 February 2020

volume

26

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15 February 2020

page(s)

3051-3058

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15 February 2020

issue

24

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Personalized copy number and segmental duplication maps using next-generation sequencing.

15 February 2020

cites work

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High-resolution mapping of copy-number alterations with massively parallel sequencing

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Substantial biases in ultra-short read data sets from high-throughput DNA sequencing

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A sequence-level map of chromosomal breakpoints in the MCF-7 breast cancer cell line yields insights into the evolution of a cancer genome

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21 January 2018

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Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes

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Bayesian analysis of the differences of count data

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A robust framework for detecting structural variations in a genome

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MoDIL: detecting small indels from clone-end sequencing with mixtures of distributions

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The Sequence Alignment/Map format and SAMtools

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Fast and accurate short read alignment with Burrows-Wheeler transform

21 January 2018

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Array comparative genomic hybridization and its applications in cancer

21 January 2018

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A comprehensive catalogue of somatic mutations from a human cancer genome

21 January 2018

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A census of amplified and overexpressed human cancer genes

21 January 2018

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Next-generation DNA sequencing

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Complex landscapes of somatic rearrangement in human breast cancer genomes

21 January 2018

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21 January 2018

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A comparison study: applying segmentation to array CGH data for downstream analyses

21 January 2018

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CNV-seq, a new method to detect copy number variation using high-throughput sequencing

21 January 2018

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Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads

21 January 2018

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Sensitive and accurate detection of copy number variants using read depth of coverage

21 January 2018

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Transcriptome-guided characterization of genomic rearrangements in a breast cancer cell line

21 January 2018

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10.1093/BIOINFORMATICS/BTQ587

21 January 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20966003%20AND%20SRC:MED&resulttype=core&format=json

journals/bioinformatics/IvakhnoRCECT10

15 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference