Applying label-free quantitation to top down proteomics. (Q33662342)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24807621%20AND%20SRC:MED&resulttype=core&format=json

17 March 2020

title

Applying label-free quantitation to top down proteomics (English)

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17 March 2020

4

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17 March 2020

Paul M. Thomas

9

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17 March 2020

author name string

Ioanna Ntai

1

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17 March 2020

Kyunggon Kim

2

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17 March 2020

Ryan T Fellers

3

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17 March 2020

Archer D Smith

5

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17 March 2020

Bryan P Early

6

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17 March 2020

John P Savaryn

7

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17 March 2020

Richard D LeDuc

8

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17 March 2020

Neil L Kelleher

10

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17 March 2020

language of work or name

English

0 references

publication date

7 May 2014

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17 March 2020

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17 March 2020

volume

86

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17 March 2020

page(s)

4961-4968

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17 March 2020

issue

10

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Quantitative bottom-up proteomics depends on digestion conditions.

17 March 2020

cites work

1 reference

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Large-scale top-down proteomics of the human proteome: membrane proteins, mitochondria, and senescence.

21 June 2018

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The emergence of top-down proteomics in clinical research

21 June 2018

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Top-down proteomics reveals a unique protein S-thiolation switch in Salmonella Typhimurium in response to infection-like conditions.

21 June 2018

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Proteoform: a single term describing protein complexity

21 June 2018

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Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae

21 June 2018

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Evaluation of the compact high-field orbitrap for top-down proteomics of human cells

21 June 2018

1 reference

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Robust analysis of the yeast proteome under 50 kDa by molecular-mass-based fractionation and top-down mass spectrometry

21 June 2018

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Augmented phosphorylation of cardiac troponin I in hypertensive heart failure

21 June 2018

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Mapping intact protein isoforms in discovery mode using top-down proteomics

21 June 2018

1 reference

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On the scalability and requirements of whole protein mass spectrometry

21 June 2018

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Posttranslational modification of pili upon cell contact triggers N. meningitidis dissemination

21 June 2018

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Quantitative analysis of intact apolipoproteins in human HDL by top-down differential mass spectrometry

21 June 2018

1 reference

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Quantitative top-down proteomics of SILAC labeled human embryonic stem cells.

21 June 2018

1 reference

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Size-sorting combined with improved nanocapillary liquid chromatography-mass spectrometry for identification of intact proteins up to 80 kDa

21 June 2018

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Global histone profiling by LC-FTMS after inhibition and knockdown of deacetylases in human cells

21 June 2018

1 reference

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Using ProSight PTM and related tools for targeted protein identification and characterization with high mass accuracy tandem MS data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033644

Top-down proteomics on a chromatographic time scale using linear ion trap fourier transform hybrid mass spectrometers

21 June 2018

1 reference

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Approaching a complete repository of sequence-verified protein-encoding clones for Saccharomyces cerevisiae

21 June 2018

1 reference

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Efficient high-throughput discovery of large peptidic hormones and biomarkers

21 June 2018

1 reference

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Top-Down Proteomics for Rapid Identification of Intact Microorganisms

21 June 2018

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21 June 2018

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Global analysis of protein expression in yeast

21 June 2018

1 reference

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A synthetic analysis of the Saccharomyces cerevisiae stress sensor Mid2p, and identification of a Mid2p-interacting protein, Zeo1p, that modulates the PKC1-MPK1 cell integrity pathway

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033644

Mass spectrometry-based proteomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033644

'Top down' protein characterization via tandem mass spectrometry

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033644

The SIN3/RPD3 deacetylase complex is essential for G(2) phase cell cycle progression and regulation of SMRTER corepressor levels

21 June 2018

1 reference

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The transcriptional response of yeast to saline stress

21 June 2018

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HDA1 and RPD3 are members of distinct yeast histone deacetylase complexes that regulate silencing and transcription

21 June 2018

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A simple and efficient method for direct gene deletion in Saccharomyces cerevisiae

21 June 2018

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A method for the quantitative recovery of protein in dilute solution in the presence of detergents and lipids

21 June 2018

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Roles of the translationally controlled tumour protein (TCTP) and the double-stranded RNA-dependent protein kinase, PKR, in cellular stress responses.

21 June 2018

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Quantitative analysis of modified proteins and their positional isomers by tandem mass spectrometry: human histone H4.

30 October 2018

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Top-down approaches for measuring expression ratios of intact yeast proteins using Fourier transform mass spectrometry

30 October 2018

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Comparison of label-free methods for quantifying human proteins by shotgun proteomics.

30 October 2018

1 reference

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Differential mass spectrometry: a label-free LC-MS method for finding significant differences in complex peptide and protein mixtures.

30 October 2018

1 reference

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High-sensitivity Orbitrap mass analysis of intact macromolecular assemblies

30 October 2018

1 reference

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Protein labeling by iTRAQ: A new tool for quantitative mass spectrometry in proteome research

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033644

Quantitative analysis of complex peptide mixtures using FTMS and differential mass spectrometry

30 October 2018

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12 December 2020

An accurate mass tag strategy for quantitative and high-throughput proteome measurements

1 reference

12 December 2020

Proteome analysis using selective incorporation of isotopically labeled amino acids

1 reference

12 December 2020

Tandem Mass Tag Protein Labeling for Top-Down Identification and Quantification

1 reference

12 December 2020

Identifiers

DOI

10.1021/AC500395K

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24807621%20AND%20SRC:MED&resulttype=core&format=json

17 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24807621%20AND%20SRC:MED&resulttype=core&format=json

17 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24807621%20AND%20SRC:MED&resulttype=core&format=json