High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABER-TOOTH. (Q33578211)

28 July 2017

High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABER-TOOTH. (English)

1 reference

28 July 2017

1 reference

Ugo Bastolla

3

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author name string

Florian Teichert

series ordinal

1

1 reference

PubMed ID

20470364

28 July 2017

Jonas Minning

series ordinal

2

1 reference

PubMed ID

20470364

28 July 2017

Markus Porto

series ordinal

4

1 reference

28 July 2017

14 May 2010

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28 July 2017

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28 July 2017

11

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28 July 2017

251

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https://scigraph.springernature.com/pub.10.1186/1471-2105-11-251

28 July 2017

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cites work

SABERTOOTH: protein structural alignment based on a vectorial structure representation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2885375

TOPDB: topology data bank of transmembrane proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2885375

Critical assessment of methods of protein structure prediction-Round VII

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2885375

CRNPRED: highly accurate prediction of one-dimensional protein structures by large-scale critical random networks.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2885375

A protein evolution model with independent sites that reproduces site-specific amino acid distributions from the Protein Data Bank

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2885375

A two-stage approach for improved prediction of residue contact maps.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2885375

TM-align: a protein structure alignment algorithm based on the TM-score

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2885375

Protein homology detection by HMM-HMM comparison

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2885375

Predicting absolute contact numbers of native protein structure from amino acid sequence.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2885375

Where did the BLOSUM62 alignment score matrix come from?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2885375

MUSCLE: multiple sequence alignment with high accuracy and high throughput

21 June 2018

1 reference

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The ASTRAL Compendium in 2004

21 June 2018

1 reference

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LGA: A method for finding 3D similarities in protein structures

21 June 2018

1 reference

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MAMMOTH (matching molecular models obtained from theory): an automated method for model comparison

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2885375

Getting the most from PSI-BLAST.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2885375

MaxSub: an automated measure for the assessment of protein structure prediction quality.

21 June 2018

1 reference

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T-Coffee: A novel method for fast and accurate multiple sequence alignment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2885375

Protein secondary structure prediction based on position-specific scoring matrices

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2885375

BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2885375

HOMSTRAD: a database of protein structure alignments for homologous families

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2885375

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2885375

The structural alignment between two proteins: is there a unique answer?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2885375

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2885375

Principal eigenvector of contact matrices and hydrophobicity profiles in proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2885375

31 October 2018

Identifiers

DOI

10.1186/1471-2105-11-251

1 reference

journals/bmcbi/TeichertMBP10

28 July 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

28 July 2017

1 reference

PubMed ID

20470364