Quality control in microarray assessment of gene expression in human airway epithelium (Q33512143)

27 July 2017

Quality control in microarray assessment of gene expression in human airway epithelium (English)

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27 July 2017

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Tina Raman

1

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27 July 2017

Timothy P O'Connor

2

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27 July 2017

Neil R Hackett

3

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27 July 2017

Wei Wang

4

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27 July 2017

Ben-Gary Harvey

5

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27 July 2017

Marc A Attiyeh

6

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27 July 2017

David T Dang

7

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27 July 2017

Matthew Teater

8

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27 July 2017

Ronald G Crystal

9

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27 July 2017

language of work or name

English

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publication date

24 October 2009

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27 July 2017

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27 July 2017

10

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27 July 2017

493

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https://scigraph.springernature.com/pub.10.1186/1471-2164-10-493

27 July 2017

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cites work

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Effect of RNA quality on transcript intensity levels in microarray analysis of human post-mortem brain tissues

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Bronchoalveolar lavage as a diagnostic tool

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Gene expression profiling in patients with chronic obstructive pulmonary disease and lung cancer

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21 June 2018

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Characterization of the effect of sample quality on high density oligonucleotide microarray data using progressively degraded rat liver RNA.

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RNA quality in frozen breast cancer samples and the influence on gene expression analysis--a comparison of three evaluation methods using microcapillary electrophoresis traces

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21 June 2018

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21 June 2018

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Expression of genes involved in oxidative stress responses in airway epithelial cells of smokers with chronic obstructive pulmonary disease.

21 June 2018

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Modification of gene expression of the small airway epithelium in response to cigarette smoking

21 June 2018

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21 June 2018

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RNA extraction for arrays

21 June 2018

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Preliminary comparison of quantity, quality, and microarray performance of RNA extracted from formalin-fixed, paraffin-embedded, and unfixed frozen tissue samples

21 June 2018

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Adjusting batch effects in microarray expression data using empirical Bayes methods

21 June 2018

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Assessment of the relationship between pre-chip and post-chip quality measures for Affymetrix GeneChip expression data

21 June 2018

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The impact of expression profiling on prognostic and predictive testing in breast cancer

21 June 2018

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RNA integrity and the effect on the real-time qRT-PCR performance

21 June 2018

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21 June 2018

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The expression signature of in vitro senescence resembles mouse but not human aging

21 June 2018

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Simpleaffy: a BioConductor package for Affymetrix Quality Control and data analysis

21 June 2018

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Effects of RNA degradation on gene expression analysis of human postmortem tissues

21 June 2018

1 reference

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Towards standardization of RNA quality assessment using user-independent classifiers of microcapillary electrophoresis traces

21 June 2018

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Reliability and reproducibility of gene expression measurements using amplified RNA from laser-microdissected primary breast tissue with oligonucleotide arrays

21 June 2018

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QA/QC: challenges and pitfalls facing the microarray community and regulatory agencies

21 June 2018

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Comprehensive gene expression profiles reveal pathways related to the pathogenesis of chronic obstructive pulmonary disease

21 June 2018

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Effects of cigarette smoke on the human airway epithelial cell transcriptome

21 June 2018

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Effect of agonal and postmortem factors on gene expression profile: quality control in microarray analyses of postmortem human brain

21 June 2018

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Advantages and limitations of microarray technology in human cancer

21 June 2018

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Reproducibility of oligonucleotide arrays using small samples

21 June 2018

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Accurate and reproducible gene expression profiles from laser capture microdissection, transcript amplification, and high density oligonucleotide microarray analysis

21 June 2018

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21 June 2018

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Navigating gene expression using microarrays--a technology review

21 June 2018

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A new approach for filtering noise from high-density oligonucleotide microarray datasets

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774870

The sharing of cDNA microarray data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774870

Global strategy for the diagnosis, management, and prevention of chronic obstructive pulmonary disease. NHLBI/WHO Global Initiative for Chronic Obstructive Lung Disease (GOLD) Workshop summary

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774870

Expressing what's on your mind: DNA arrays and the brain

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774870

Use of bronchoalveolar lavage in humans--past necessity and future imperative

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774870

Cluster analysis and display of genome-wide expression patterns

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774870

Quantitative assessment of the epithelial and inflammatory cell populations in large airways of normals and individuals with cystic fibrosis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774870

Efficient extraction of RNA from mammalian tissue

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774870

Bronchoalveolar lavage as a research tool.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774870

Quality control for microarray analysis of human brain samples: The impact of postmortem factors, RNA characteristics, and histopathology.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774870

Airway epithelial gene expression in the diagnostic evaluation of smokers with suspect lung cancer

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774870

Lack of correct data format and comparability limits future integrative microarray research.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774870

Impact of RNA degradation on gene expression profiles: assessment of different methods to reliably determine RNA quality.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774870

Comprehensive analysis of gene expression on GOLD-2 Versus GOLD-0 smokers reveals novel genes important in the pathogenesis of COPD.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774870

Utility of lab-on-a-chip technology for high-throughput nucleic acid and protein analysis.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774870

Evaluation of quality-control criteria for microarray gene expression analysis

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774870

Universal RNA reference materials for gene expression.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774870

Expression profiling--best practices for data generation and interpretation in clinical trials.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774870

Chipping away at the chip bias: RNA degradation in microarray analysis

31 October 2018

1 reference

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Total RNA suitable for molecular biology analysis.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774870

Variability of Antioxidant-Related Gene Expression in the Airway Epithelium of Cigarette Smokers

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774870

Trends in microarray analysis

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774870

Cough and phlegm are important predictors of health status in smokers without COPD.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774870

Semiquantitative polymerase chain reaction in RNase-producing tissues: Analysis of the developing pancreas.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774870

Multiple-laboratory comparison of microarray platforms

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774870

Effects of Ischemia on Gene Expression

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774870

Pattern robustness of diagnostic gene expression signatures in leukemia

31 October 2018

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Quality assessment of microarray experiments

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12 December 2020

Gene expression microarray studies in polygenic psychiatric disorders: applications and data analysis

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Consensus guidelines for microarray gene expression analyses in leukemia from three European leukemia networks

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Impact of pre-analytical handling on bone marrow mRNA gene expression

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Evaluation of clinical methods for rating dyspnea

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The St George's Respiratory Questionnaire

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A self-complete measure of health status for chronic airflow limitation. The St. George's Respiratory Questionnaire

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12 December 2020

Identifiers

DOI

10.1186/1471-2164-10-493

1 reference

Dimensions Publication ID

27 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-10-493

9 September 2019

1 reference

27 July 2017

1 reference