Methodological considerations for gene expression profiling of human brain. (Q37329070)

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30 December 2019

title

Methodological considerations for gene expression profiling of human brain (English)

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10

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Simon J. Evans

5

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30 December 2019

Prabhakara Choudary

6

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Hiroaki Tomita

9

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14

Huda Akil

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30 December 2019

author name string

Mary Atz

1

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30 December 2019

David Walsh

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Preston Cartagena

3

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Jun Li

4

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Kevin Overman

7

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Richard Stein

8

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30 December 2019

Rick Myers

11

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Stanley J Watson

12

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E G Jones

13

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William E Bunney

15

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Marquis P Vawter

16

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Members of National Institute of Mental Health Conte Center and Pritzker Neuropsychiatric Disorders Research Consortium

17

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publication date

8 April 2007

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Journal of Neuroscience Methods

30 December 2019

published in

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volume

163

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30 December 2019

page(s)

295-309

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30 December 2019

issue

2

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Mitochondrial-related gene expression changes are sensitive to agonal-pH state: implications for brain disorders

30 December 2019

cites work

1 reference

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The RIN: an RNA integrity number for assigning integrity values to RNA measurements

6 September 2017

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Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data

6 September 2017

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Deficient hippocampal neuron expression of proteasome, ubiquitin, and mitochondrial genes in multiple schizophrenia cohorts

6 September 2017

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Effects of RNA degradation on gene expression analysis of human postmortem tissues

6 September 2017

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A microarray study of post-mortem mRNA degradation in mouse brain tissue

6 September 2017

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Microarrays--the challenge of preparing brain tissue samples.

6 September 2017

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Towards standardization of RNA quality assessment using user-independent classifiers of microcapillary electrophoresis traces

6 September 2017

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A qualitative assessment of direct-labeled cDNA products prior to microarray analysis

6 September 2017

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Bipolar disorder: an update

6 September 2017

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DNA chip technology in brain banks: confronting a degrading world.

6 September 2017

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Messenger RNA decay in mammalian cells: the exonuclease perspective

6 September 2017

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DNA microarray analysis of postmortem brain tissue

6 September 2017

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Bringing the role of mRNA decay in the control of gene expression into focus

6 September 2017

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Tissue microarrays: a current medical research tool

6 September 2017

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Progress in the use of microarray technology to study the neurobiology of disease

6 September 2017

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Mitochondrial dysfunction in schizophrenia: evidence for compromised brain metabolism and oxidative stress

6 September 2017

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Effect of agonal and postmortem factors on gene expression profile: quality control in microarray analyses of postmortem human brain

6 September 2017

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Moderate degradation does not preclude microarray analysis of small amounts of RNA.

6 September 2017

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Identifying biological themes within lists of genes with EASE

6 September 2017

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Comparing protein abundance and mRNA expression levels on a genomic scale

6 September 2017

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Decay rates of human mRNAs: correlation with functional characteristics and sequence attributes

6 September 2017

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PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes

6 September 2017

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Biochemical and molecular studies using human autopsy brain tissue

6 September 2017

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Microarray technology: a review of new strategies to discover candidate vulnerability genes in psychiatric disorders

6 September 2017

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Identification of a gene causing human cytochrome c oxidase deficiency by integrative genomics

6 September 2017

1 reference

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MRNA stability and the control of gene expression: implications for human disease

6 September 2017

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Evaluation of Affymetrix Gene Chip sensitivity in rat hippocampal tissue using SAGE analysis. Serial Analysis of Gene Expression

6 September 2017

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Neurobiology of depression

6 September 2017

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Psychological autopsy studies--a review

6 September 2017

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Analysis of complex brain disorders with gene expression microarrays: schizophrenia as a disease of the synapse

6 September 2017

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Gene expression profiling in the post-mortem human brain--no cause for dismay.

6 September 2017

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Microarray applications in neuroscience

6 September 2017

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Genome-wide expression analysis reveals dysregulation of myelination-related genes in chronic schizophrenia

6 September 2017

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Genetics of bipolar disorder.

6 September 2017

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The poly(A)-poly(A)-binding protein complex is a major determinant of mRNA stability in vitro

6 September 2017

1 reference

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Increased brain dopamine and reduced glutamic acid decarboxylase and choline acetyl transferase activity in schizophrenia and related psychoses

6 September 2017

1 reference

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Recovery and expression of messenger RNA from postmortem human brain tissue

6 September 2017

1 reference

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The poly(A) tail inhibits the assembly of a 3'-to-5' exonuclease in an in vitro RNA stability system

14 September 2017

1 reference

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Heat-shock 70 messenger RNA levels in human brain: correlation with agonal fever

14 September 2017

1 reference

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Pre- and postmortem influences on brain RNA.

14 September 2017

1 reference

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GABA in Huntington’s Chorea, Parkinsonism and Schizophrenia

14 September 2017

1 reference

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Differential effects of agonal status on measurements of GABA and glutamate decarboxylase in human post-mortem brain tissue from control and Huntington's chorea subjects

14 September 2017

1 reference

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The genetics of bipolar disorder.

14 September 2017

1 reference

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Assembly and use of a broadly applicable neural cDNA microarray.

28 September 2017

1 reference

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Multivariate analysis of RNA levels from postmortem human brains as measured by three different methods of RT-PCR. Stanley Neuropathology Consortium.

26 June 2018

1 reference

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Effect of smoking history on [3H]nicotine binding in human postmortem brain.

26 June 2018

1 reference

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Validity of DSM-III-R diagnosis by psychological autopsy: a comparison with clinician ante-mortem diagnosis.

26 June 2018

1 reference

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Distribution of GABA in post-mortem brain tissue from control, psychotic and Huntington's chorea subjects.

26 June 2018

1 reference

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Extensive postmortem stability of RNA from rat and human brain.

26 June 2018

1 reference

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Enzyme activities in relation to pH and lactate in postmortem brain in Alzheimer-type and other dementias.

26 June 2018

1 reference

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Terminal coma affects messenger RNA detection in post mortem human temporal cortex.

26 June 2018

1 reference

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Effect of pre- and postmortem variables on specific mRNA levels in human brain.

26 June 2018

1 reference

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Critical factors in gene expression in postmortem human brain: Focus on studies in schizophrenia.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3835340

Brain pH has a significant impact on human postmortem hippocampal gene expression profiles.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3835340

The role of the AUUUUA hexamer for the posttranscriptional regulation of the AT1 receptor mRNA stability.

2 September 2018

1 reference

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Molecular aging in human prefrontal cortex is selective and continuous throughout adult life.

2 September 2018

1 reference

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Altered expression of 14-3-3 genes in the prefrontal cortex of subjects with schizophrenia.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3835340

Neurochemical markers for schizophrenia, bipolar disorder, and major depression in postmortem brains

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3835340

Reliability of psychiatric diagnosis in postmortem research.

2 September 2018

1 reference

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Altered expression of mitochondria-related genes in postmortem brains of patients with bipolar disorder or schizophrenia, as revealed by large-scale DNA microarray analysis.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3835340

Evaluation of quality-control criteria for microarray gene expression analysis

2 September 2018

1 reference

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Comparison of microarray-based mRNA profiling technologies for identification of psychiatric disease and drug signatures.

2 September 2018

1 reference

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Evaluating RNA status for RT-PCR in extracts of postmortem human brain tissue.

2 September 2018

1 reference

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Molecular evidence for mitochondrial dysfunction in bipolar disorder.

2 September 2018

1 reference

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Quantitative polymerase chain reaction: validation of microarray results from postmortem brain studies.

2 September 2018

1 reference

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Application and optimization of microarray technologies for human postmortem brain studies

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3835340

Systematic changes in gene expression in postmortem human brains associated with tissue pH and terminal medical conditions

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3835340

Chipping away at the chip bias: RNA degradation in microarray analysis

2 September 2018

1 reference

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Quantifying mRNA in postmortem human brain: influence of gender, age at death, postmortem interval, brain pH, agonal state and inter-lobe mRNA variance

2 September 2018

1 reference

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Recovery and measurement of specific RNA species from postmortem brain tissue: a general reduction in Alzheimer's disease detected by molecular hybridization.

2 September 2018

1 reference

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Tissue pH as an indicator of mRNA preservation in human post-mortem brain

2 September 2018

1 reference

12 December 2020

Selective postmortem degradation of inducible heat shock protein 70 (hsp70) mRNAs in rat brain

1 reference

12 December 2020

The relative importance of premortem acidosis and postmortem interval for human brain gene expression studies: selective mRNA vulnerability and comparison with their encoded proteins

1 reference

12 December 2020

Effect of hypoxia on glucose-modulated cerebral lactic acidosis, agonal glycolytic rates, and energy utilization

1 reference

12 December 2020

The validity of diagnoses obtained through the psychological autopsy procedure in adolescent suicide victims: use of family history

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12 December 2020

The patients dying after long terminal phase have acidotic brains; implications for biochemical measurements on autopsy tissue

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12 December 2020

Quality assessment of microarray experiments

1 reference

12 December 2020

10.1016/J.JNEUMETH.2007.03.022

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17512057%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17512057%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

1 reference