MetaProm: a neural network based meta-predictor for alternative human promoter prediction (Q33302977)

25 July 2017

title

MetaProm: a neural network based meta-predictor for alternative human promoter prediction (English)

1 reference

25 July 2017

Junwen Wang

1

0 references

Hung Tseng

series ordinal

3

object named as

Hung Tseng

1 reference

25 July 2017

2

Lyle H Ungar

1 reference

25 July 2017

Sridhar Hannenhalli

4

1 reference

25 July 2017

language of work or name

English

0 references

publication date

17 October 2007

1 reference

25 July 2017

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25 July 2017

volume

8

1 reference

25 July 2017

page(s)

374

1 reference

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

25 July 2017

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28 July 2018

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Boosting with stumps for predicting transcription start sites

28 July 2018

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Characterization and predictive discovery of evolutionarily conserved mammalian alternative promoters

28 July 2018

1 reference

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28 July 2018

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Identification of core promoter modules in Drosophila and their application in accurate transcription start site prediction

28 July 2018

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Performance assessment of promoter predictions on ENCODE regions in the EGASP experiment

28 July 2018

1 reference

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Genome-wide analysis of mammalian promoter architecture and evolution

28 July 2018

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28 July 2018

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28 July 2018

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Genome-wide promoter extraction and analysis in human, mouse, and rat.

28 July 2018

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Exploring relationships and mining data with the UCSC Gene Sorter

28 July 2018

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28 July 2018

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The MTE, a new core promoter element for transcription by RNA polymerase II.

28 July 2018

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Integrative annotation of 21,037 human genes validated by full-length cDNA clones

28 July 2018

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28 July 2018

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An evaluation of new criteria for CpG islands in the human genome as gene markers

28 July 2018

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Regulation of RNA polymerase II transcription by sequence-specific DNA binding factors

28 July 2018

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28 July 2018

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Dragon gene start finder: an advanced system for finding approximate locations of the start of gene transcriptional units

28 July 2018

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PromH: Promoters identification using orthologous genomic sequences

28 July 2018

1 reference

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Computational analysis of core promoters in the Drosophila genome

28 July 2018

1 reference

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The DPE, a core promoter element for transcription by RNA polymerase II.

28 July 2018

1 reference

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Histone methylation: dynamic or static?

28 July 2018

1 reference

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Consensus promoter identification in the human genome utilizing expressed gene markers and gene modeling

28 July 2018

1 reference

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Dragon Promoter Finder: recognition of vertebrate RNA polymerase II promoters

28 July 2018

1 reference

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Transcription regulation by histone methylation: interplay between different covalent modifications of the core histone tails

28 July 2018

1 reference

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Orchestrated response: a symphony of transcription factors for gene control

28 July 2018

1 reference

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Highly specific localization of promoter regions in large genomic sequences by PromoterInspector: a novel context analysis approach

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2194789

Discovery and modeling of transcriptional regulatory regions

28 July 2018

1 reference

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28 July 2018

1 reference

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Eukaryotic promoter recognition

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2194789

Predicting Pol II promoter sequences using transcription factor binding sites

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2194789

28 July 2018

CpG islands and genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2194789

CpG islands as gene markers in the human genome.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2194789

Promoter prediction analysis on the whole human genome.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2194789

Comprehensive analysis of CpG islands in human chromosomes 21 and 22

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2194789

Promoter prediction in the human genome

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2194789

Large-scale human promoter mapping using CpG islands.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2194789

PromFD 1.0: a computer program that predicts eukaryotic pol II promoters using strings and IMD matrices.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2194789

Number of CpG islands and genes in human and mouse

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2194789

Computational identification of promoters and first exons in the human genome

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17941982

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A mammalian promoter model links cis elements to genetic networks

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17941982

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-8-374

1 reference

Dimensions Publication ID

25 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-8-374

9 September 2019

1 reference

25 July 2017

1 reference