WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences (Q33272665)

25 July 2017

WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences (English)

1 reference

25 July 2017

3

1 reference

25 July 2017

Federico Zambelli

2

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author name string

Giulio Pavesi

series ordinal

1

1 reference

25 July 2017

7 February 2007

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25 July 2017

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25 July 2017

8

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25 July 2017

1

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22 June 2019

page(s)

46

1 reference

Creative Commons Attribution 2.0 Generic

25 July 2017

start time

7 February 2007

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-8-46

0 references

cites work

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes

21 June 2018

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Ultraconserved Elements in the Human Genome

21 June 2018

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Regulatory potential scores from genome-wide three-way alignments of human, mouse, and rat

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Background rareness-based iterative multiple sequence alignment algorithm for regulatory element detection

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Discovery of novel transcription factor binding sites by statistical overrepresentation

21 June 2018

1 reference

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Sequence first. Ask questions later

21 June 2018

1 reference

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Evolution of transcription factor binding sites in Mammalian gene regulatory regions: conservation and turnover

21 June 2018

1 reference

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Transcriptional regulation of the stem cell leukemia gene (SCL)--comparative analysis of five vertebrate SCL loci

21 June 2018

1 reference

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Selective constraint in intergenic regions of human and mouse genomes.

21 June 2018

1 reference

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Genomic strategies to identify mammalian regulatory sequences

21 June 2018

1 reference

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Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1803799

Control of cardiac-specific transcription by p300 through myocyte enhancer factor-2D

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1803799

DNA binding sites: representation and discovery

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1803799

The value of prior knowledge in discovering motifs with MEME

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1803799

Embryonic epsilon and gamma globin genes of a prosimian primate (Galago crassicaudatus). Nucleotide and amino acid sequences, developmental regulation and phylogenetic footprints.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1803799

On the power of profiles for transcription factor binding site detection.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1803799

Genome-wide computational prediction of transcriptional regulatory modules reveals new insights into human gene expression

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1803799

Evaluating phylogenetic footprinting for human-rodent comparisons.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1803799

DNA assembly with gaps (Dawg): simulating sequence evolution.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1803799

Discovery of regulatory elements in vertebrates through comparative genomics.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1803799

A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1803799

Human-mouse genome comparisons to locate regulatory sites

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1803799

Identification of transcription factor binding sites in the human genome sequence

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17286865

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-8-46

1 reference

journals/bmcbi/PavesiZP07

25 July 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

25 July 2017

1 reference

PubMed ID

17286865