How representative are the known structures of the proteins in a complete genome? A comprehensive structural census (Q31934081)

5 July 2017

How representative are the known structures of the proteins in a complete genome? A comprehensive structural census (English)

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5 July 2017

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whole genome sequencing

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1

Gerstein M

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5 July 2017

1 January 1998

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5 July 2017

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5 July 2017

3

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5 July 2017

497-512

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5 July 2017

6

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GOR method for predicting protein secondary structure from amino acid sequence.

5 July 2017

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Further developments of protein secondary structure prediction using information theory. New parameters and consideration of residue pairs

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

PHD: predicting one-dimensional protein structure by profile-based neural networks

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https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Jury returns on structure prediction

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https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Prediction of protein secondary structure at better than 70% accuracy

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https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Correct structure prediction?

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https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Predicting protein crystal structures

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Predicting the conformation of proteins. Man versus machine

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Challenging times for bioinformatics

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https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

New protein functions in yeast chromosome VIII.

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https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Are there dominant membrane protein families with a given number of helices?

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https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

How many yeast genes code for membrane-spanning proteins?

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https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Transmembrane helices predicted at 95% accuracy

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Topology prediction for helical transmembrane proteins at 86% accuracy

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https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

How many membrane proteins are there?

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https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Dinucleotide relative abundance extremes: a genomic signature

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https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Statistical analyses of counts and distributions of restriction sites in DNA sequences

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Frequent oligonucleotides and peptides of the Haemophilus influenzae genome

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

A structural census of the current population of protein sequences

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https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

A structural census of genomes: comparing bacterial, eukaryotic, and archaeal genomes in terms of protein structure

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Comparing genomes in terms of protein structure: surveys of a finite parts list.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Patterns of protein-fold usage in eight microbial genomes: a comprehensive structural census

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https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Statistics of sequence-structure threading

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https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Issues in searching molecular sequence databases

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

A unified statistical framework for sequence comparison and structure comparison

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Population statistics of protein structures: lessons from structural classifications

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Structural patterns in globular proteins

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Foldons, protein structural modules, and exons

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Recombination of protein domains facilitated by co-translational folding in eukaryotes.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Biology's new Rosetta stone

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https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

An investigation of protein subunit and domain interfaces

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

The winds of (evolutionary) change: breathing new life into microbiology

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Sequencing and analysis of bacterial genomes

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

The complete genome sequence of the gastric pathogen Helicobacter pylori

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

A bug with excess gastric avidity

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Analysis of compositionally biased regions in sequence databases

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Domain closure in lactoferrin. Two hinges produce a see-saw motion between alternative close-packed interfaces

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

A database of macromolecular motions

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Molecular Architecture and Electrostatic Properties of a Bacterial Porin

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Statistical data analysis in the computer age.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Membrane protein structure prediction. Hydrophobicity analysis and the positive-inside rule

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Membrane proteins: from sequence to structure

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms

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https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Protein Data Bank archives of three-dimensional macromolecular structures.

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https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

PDBbrowse--a graphics interface to the Brookhaven Protein Data Bank

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https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

SCOP: a structural classification of proteins database for the investigation of sequences and structures

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Gene duplications in H. influenzae.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

SCOP: a Structural Classification of Proteins database

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https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Average core structures and variability measures for protein families: application to the immunoglobulins

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https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Comprehensive assessment of automatic structural alignment against a manual standard, the scop classification of proteins

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https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Fully automated genome analysis that reflects user needs and preferences. A detailed introduction to the MAGPIE system architecture.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Analysis of a Bacillus subtilis genome fragment using a co-operative computer system prototype

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Rapid and sensitive protein similarity searches

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Improved tools for biological sequence comparison

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Empirical statistical estimates for sequence similarity searches.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Effective protein sequence comparison

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https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Measurement of the effectiveness of transitive sequence comparison, through a third 'intermediate' sequence

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Identification of common molecular subsequences

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Detection of conserved segments in proteins: iterative scanning of sequence databases with alignment blocks

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

1 reference

7 January 2021

Prediction of protein folding class using global description of amino acid sequence

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Structural assignments to the Mycoplasma genitalium proteins show extensive gene duplications and domain rearrangements

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Selection of representative protein data sets

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https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Selection of a representative set of structures from Brookhaven Protein Data Bank

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Identifying nonpolar transbilayer helices in amino acid sequences of membrane proteins

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Non-globular domains in protein sequences: automated segmentation using complexity measures

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

PEDANTic genome analysis

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Identification and application of the concepts important for accurate and reliable protein secondary structure prediction

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Prediction of protein secondary structure by combining nearest-neighbor algorithms and multiple sequence alignments

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Prediction of protein folding class from amino acid composition

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Cross-validation of protein structural class prediction using statistical clustering and neural networks

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Whole-genome random sequencing and assembly of Haemophilus influenzae Rd

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

The Minimal Gene Complement of Mycoplasma genitalium

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Complete Genome Sequence of the Methanogenic Archaeon, Methanococcus jannaschii

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Sequence Analysis of the Genome of the Unicellular Cyanobacterium Synechocystis sp. Strain PCC6803. II. Sequence Determination of the Entire Genome and Assignment of Potential Protein-coding Regions

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

The complete genome sequence of Escherichia coli K-12

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Helix propensities of the amino acids measured in alanine-based peptides without helix-stabilizing side-chain interactions.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

A thermodynamic scale for the beta-sheet forming tendencies of the amino acids.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

Bootstrap Methods for Standard Errors, Confidence Intervals, and Other Measures of Statistical Accuracy

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900066-2

7 January 2021

10.1016/S1359-0278(98)00066-2

Identifiers

DOI

1 reference

5 July 2017

1 reference

PubMed ID

9889159