SoFIA: a data integration framework for annotating high-throughput datasets (Q31096686)

28 June 2017

SoFIA: a data integration framework for annotating high-throughput datasets (English)

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28 June 2017

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5

Ulf Leser

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28 June 2017

Liam Harold Childs

1

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28 June 2017

Soulafa Mamlouk

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2

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28 June 2017

Jörgen Brandt

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3

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28 June 2017

Christine Sers

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4

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28 June 2017

language of work or name

English

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publication date

13 May 2016

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28 June 2017

8

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based on heuristic

inferred from page(s)

published in

Bioinformatics

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28 June 2017

32

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28 June 2017

17

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28 June 2017

2590-2597

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A global reference for human genetic variation

28 June 2017

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

Predicting the functional effect of amino acid substitutions and indels

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

Mutation nomenclature extensions and suggestions to describe complex mutations: a discussion

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

The Sequence Ontology: a tool for the unification of genome annotations

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

COSMIC: exploring the world's knowledge of somatic mutations in human cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

Galaxy: a platform for interactive large-scale genome analysis

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

GENCODE: producing a reference annotation for ENCODE

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

BioMart: driving a paradigm change in biological data management

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

DrugBank 4.0: shedding new light on drug metabolism

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

BioWarehouse: a bioinformatics database warehouse toolkit

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

Tabix: fast retrieval of sequence features from generic TAB-delimited files

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

The Sequence Alignment/Map format and SAMtools

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

KaBOB: ontology-based semantic integration of biomedical databases

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation.

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

The semantic web in translational medicine: current applications and future directions

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

Choice of transcripts and software has a large effect on variant annotation

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

The role of codon selection in regulation of translation efficiency deduced from synthetic libraries

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

Next-generation sequencing data interpretation: enhancing reproducibility and accessibility

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

Exome sequencing identifies the cause of a mendelian disorder

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

KEGG: Kyoto Encyclopedia of Genes and Genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

Taverna: a tool for the composition and enactment of bioinformatics workflows

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

RefSeq: an update on mammalian reference sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

Magallanes: a web services discovery and automatic workflow composition tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

Local absence of secondary structure permits translation of mRNAs that lack ribosome-binding sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

dbSNP: the NCBI database of genetic variation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

An improved implementation of effective number of codons (nc).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

Columba: an integrated database of proteins, structures, and annotations

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

Translation efficiency is determined by both codon bias and folding energy

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

CRONOS: the cross-reference navigation server

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

Genomics of Drug Sensitivity in Cancer (GDSC): a resource for therapeutic biomarker discovery in cancer cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW302

10.1093/BIOINFORMATICS/BTW302

21 January 2018

Identifiers

DOI

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journals/bioinformatics/ChildsMBSL16

28 June 2017

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DBLP Dataset 2021-01-02

28 January 2021

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