Biomedical applications of ion mobility-enhanced data-independent acquisition-based label-free quantitative proteomics (Q30862485)

27 June 2017

Biomedical applications of ion mobility-enhanced data-independent acquisition-based label-free quantitative proteomics (English)

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27 June 2017

2

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6 June 2020

Stefan Tenzer

series ordinal

3

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6 June 2020

author name string

Ute Distler

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1

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6 June 2020

publication date

18 October 2014

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Expert Review of Proteomics

27 June 2017

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25327648%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

volume

11

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6 June 2020

issue

6

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6 June 2020

page(s)

675-684

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25327648%20AND%20SRC:MED&resulttype=core&format=json

Mass spectrometry-based proteomics

6 June 2020

cites work

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Proteomics: a pragmatic perspective

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Mass-spectrometry-based draft of the human proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

A draft map of the human proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

A model for random sampling and estimation of relative protein abundance in shotgun proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

The detection, correlation, and comparison of peptide precursor and product ions from data independent LC-MS with data dependant LC-MS/MS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

More than 100,000 detectable peptide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC-MS/MS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Proteomics on an Orbitrap benchtop mass spectrometer using all-ion fragmentation

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Faster, quantitative, and accurate precursor acquisition independent from ion count

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Precursor acquisition independent from ion count: how to dive deeper into the proteomics ocean.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Shotgun collision-induced dissociation of peptides using a time of flight mass analyzer

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

XDIA: improving on the label-free data-independent analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Multiplexed MS/MS for improved data-independent acquisition

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Accurate peptide fragment mass analysis: multiplexed peptide identification and quantification

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Recent advances in mass spectrometry: data independent analysis and hyper reaction monitoring

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Absolute quantification of proteins by LCMSE: a virtue of parallel MS acquisition

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Less label, more free: approaches in label-free quantitative mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Absolute quantification of the glycolytic pathway in yeast: deployment of a complete QconCAT approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Global quantification of mammalian gene expression control

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

RIBAR and xRIBAR: Methods for reproducible relative MS/MS-based label-free protein quantification.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Comparison and applications of label-free absolute proteome quantification methods on Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

To label or not to label: applications of quantitative proteomics in neuroscience research

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Tools for label-free peptide quantification

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Label-free quantitative proteomics trends for protein-protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

An insight into iTRAQ: where do we stand now?

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Assessment of reproducibility in depletion and enrichment workflows for plasma proteomics using label-free quantitative data-independent LC-MS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Isotope coded protein label quantification of serum proteins--comparison with the label-free LC-MS and validation using the MRM approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Multidimensional protein fractionation of blood proteins coupled to data-independent nanoLC-MS/MS analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Differential seminal plasma proteome according to semen retrieval in men with spinal cord injury.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Proteomic analysis of human bronchoalveolar lavage fluid after subsgemental exposure

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Protein markers for insulin-producing beta cells with higher glucose sensitivity

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Label-free protein profiling of adipose-derived human stem cells under hyperosmotic treatment

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Analysis of the rat hypothalamus proteome by data-independent label-free LC-MS/MS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Identification of proteomic signatures associated with depression and psychotic depression in post-mortem brains from major depression patients

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Analysis of the human pituitary proteome by data independent label-free liquid chromatography tandem mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Asymmetric proteome equalization of the skeletal muscle proteome using a combinatorial hexapeptide library

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

A critical role for the cholesterol-associated proteolipids PLP and M6B in myelination of the central nervous system

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Caspase-8 regulates TNF-α-induced epithelial necroptosis and terminal ileitis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Quantitative and integrative proteome analysis of peripheral nerve myelin identifies novel myelin proteins and candidate neuropathy loci.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Myelin proteomics: molecular anatomy of an insulating sheath

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Systematic approaches to central nervous system myelin.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Proteomic analyses of human cytomegalovirus strain AD169 derivatives reveal highly conserved patterns of viral and cellular proteins in infected fibroblasts

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Quantitative proteomic analysis of hepatocyte-secreted extracellular vesicles reveals candidate markers for liver toxicity

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Oligodendrocytes secrete exosomes containing major myelin and stress-protective proteins: Trophic support for axons?

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Proteomic analysis of endothelial cell secretome: a means of studying the pleiotropic effects of Hmg-CoA reductase inhibitors

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Comprehensive absolute quantification of the cytosolic proteome of Bacillus subtilis by data independent, parallel fragmentation in liquid chromatography/mass spectrometry (LC/MS(E))

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

A historical and proteomic analysis of botulinum neurotoxin type/G.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Proteomic Analysis and Label-Free Quantification of the Large Clostridium difficile Toxins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Quantification of proteins using data-independent analysis (MSE) in simple andcomplex samples: a systematic evaluation

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Simultaneous qualitative and quantitative analysis of the Escherichia coli proteome: a sweet tale

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

A comparison of labeling and label-free mass spectrometry-based proteomics approaches.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Drift time-specific collision energies enable deep-coverage data-independent acquisition proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Using ion purity scores for enhancing quantitative accuracy and precision in complex proteomics samples

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Developing liquid chromatography ion mobility mass spectometry techniques

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Ion mobility-mass spectrometry for structural proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Mass spectrometry-based proteomics: existing capabilities and future directions

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Extracted Fragment Ion Mobility Distributions: A New Method for Complex Mixture Analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Using ion mobility data to improve peptide identification: intrinsic amino acid size parameters

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Improving qualitative and quantitative performance for MS(E)-based label-free proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

An LC-IMS-MS platform providing increased dynamic range for high-throughput proteomic studies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Qualitative and quantitative characterization of plasma proteins when incorporating traveling wave ion mobility into a liquid chromatography-mass spectrometry workflow for biomarker discovery: use of product ion quantitation as an alternative data a

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Proteomic classification of acute leukemias by alignment-based quantitation of LC-MS/MS data sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

LFQuant: a label-free fast quantitative analysis tool for high-resolution LC-MS/MS proteomics data

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

A flexible statistical model for alignment of label-free proteomics data--incorporating ion mobility and product ion information

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Effects of traveling wave ion mobility separation on data independent acquisition in proteomics studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

High-capacity peptide-centric platform to decode the proteomic response to brain injury

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Longitudinal study of differential protein expression in an Alzheimer's mouse model lacking inducible nitric oxide synthase

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Post-acute brain injury urinary signature: a new resource for molecular diagnostics

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Mast cell-deficient Kit(W-sh) "Sash" mutant mice display aberrant myelopoiesis leading to the accumulation of splenocytes that act as myeloid-derived suppressor cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Growth factor priming differentially modulates components of the extracellular matrix proteome in chondrocytes and synovium-derived stem cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Label-free mass spectrometry proteome quantification of human embryonic kidney cells following 24 hours of sialic acid overproduction

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Proteome-wide characterization of the RNA-binding protein RALY-interactome using the in vivo-biotinylation-pulldown-quant (iBioPQ) approach.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Regulation of ferroptotic cancer cell death by GPX4

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Rapid formation of plasma protein corona critically affects nanoparticle pathophysiology

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Protein identification and quantification by data-independent acquisition and multi-parallel collision-induced dissociation mass spectrometry (MS(E)) in the chloroplast stroma proteome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Proteomic analysis of an unculturable bacterial endosymbiont (Blochmannia) reveals high abundance of chaperonins and biosynthetic enzymes

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Multiple enzymatic digestions and ion mobility separation improve quantification of bacterial ribosomal proteins by data independent acquisition liquid chromatography-mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Data-independent acquisition (MSE) with ion mobility provides a systematic method for analysis of a bacteriophage structural proteome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Quantitative label-free proteomics for discovery of biomarkers in cerebrospinal fluid: assessment of technical and inter-individual variation

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Sources of technical variability in quantitative LC-MS proteomics: human brain tissue sample analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Data processing methods and quality control strategies for label-free LC-MS protein quantification

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

High resolution trapped ion mobility spectrometery of peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Exploring skyline for both MS(E) -based label-free proteomics and HRMS quantitation of small molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

Toward Plasma Proteome Profiling with Ion Mobility-Mass Spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2014.971114

10.1586/14789450.2014.971114

21 January 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25327648%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

1 reference