To label or not to label: applications of quantitative proteomics in neuroscience research (Q37976002)

26 August 2017

To label or not to label: applications of quantitative proteomics in neuroscience research (English)

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26 August 2017

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Sabine Bahn

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26 August 2017

Michaela D Filiou

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Paul C Guest

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Paul C Guest

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Daniel Martins-de-Souza

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Daniel Martins-de-Souza

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Christoph W Turck

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Christoph W Turck

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26 August 2017

23 January 2012

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26 August 2017

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26 August 2017

12

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26 August 2017

736-747

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26 August 2017

4-5

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Proteomics beyond proteomics: toward clinical applications

26 August 2017

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

A systems approach to the proteomic identification of novel cancer biomarkers

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Cardiovascular proteomics: translational studies to develop novel biomarkers in heart failure and left ventricular remodeling

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

The role of proteomics in osteoarthritis pathogenesis research

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Proteomics and opportunities for clinical translation in urological disease

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Quantitative proteomics for investigating psychiatric disorders

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Protein biomarkers in a mouse model of extremes in trait anxiety.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Neurogenesis and major depression: implications from proteomic analyses of hippocampal proteins in a rat depression model.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

N-acetyl cysteine treatment rescues cognitive deficits induced by mitochondrial dysfunction in G72/G30 transgenic mice

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Identification of differentially expressed proteins in striatum of maneb-and paraquat-induced Parkinson's disease phenotype in mouse

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Differential expression and redox proteomics analyses of an Alzheimer disease transgenic mouse model: effects of the amyloid-β peptide of amyloid precursor protein

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

A mouse model of anxiety molecularly characterized by altered protein networks in the brain proteome.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Proteome analysis of schizophrenia brain tissue

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Disease-specific alterations in frontal cortex brain proteins in schizophrenia, bipolar disorder, and major depressive disorder. The Stanley Neuropathology Consortium

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Proteomic identification of oxidatively modified proteins in Alzheimer's disease brain. Part I: creatine kinase BB, glutamine synthase, and ubiquitin carboxy-terminal hydrolase L-1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Differential mitochondrial protein expression profiling in neurodegenerative diseases

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

The current state of the art in high-resolution two-dimensional electrophoresis

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Two-dimensional gel electrophoresis in proteomics: Past, present and future

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

The neuroproteomics of schizophrenia.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Neuroproteomics approaches to decipher neuronal regeneration and degeneration

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Quantitative analysis of complex protein mixtures using isotope-coded affinity tags

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Quantitative mass spectrometry in proteomics: a critical review

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Metabolic labeling of mammalian organisms with stable isotopes for quantitative proteomic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

SILAC mouse for quantitative proteomics uncovers kindlin-3 as an essential factor for red blood cell function

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Proteomics and metabolomics analysis of a trait anxiety mouse model reveals divergent mitochondrial pathways

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Stable isotope metabolic labeling with a novel N-enriched bacteria diet for improved proteomic analyses of mouse models for psychopathologies

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Discovery and validation of colonic tumor-associated proteins via metabolic labeling and stable isotopic dilution.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Proteomic and metabolomic profiling of a trait anxiety mouse model implicate affected pathways

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Quantitative analysis of bacterial and mammalian proteomes using a combination of cysteine affinity tags and 15N-metabolic labeling

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Quantitative mass spectrometry identifies insulin signaling targets in C. elegans

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Comparison of full versus partial metabolic labeling for quantitative proteomics analysis in Arabidopsis thaliana.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Definition of Arabidopsis sterol-rich membrane microdomains by differential treatment with methyl-beta-cyclodextrin and quantitative proteomics

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Ratio-dependent significance thresholds in reciprocal 15N-labeling experiments as a robust tool in detection of candidate proteins responding to biological treatment

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Metabolic labeling of C. elegans and D. melanogaster for quantitative proteomics.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Accurate quantitation of protein expression and site-specific phosphorylation

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Characterization of anaerobic catabolism of p-coumarate in Rhodopseudomonas palustris by integrating transcriptomics and quantitative proteomics

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

SILIP: a novel stable isotope labeling method for in planta quantitative proteomic analysis

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

The SILAC fly allows for accurate protein quantification in vivo.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Shotgun proteomics using the iTRAQ isobaric tags

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Quantitative proteomics by metabolic labeling of model organisms

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Mass spectrometric-based approaches in quantitative proteomics

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Quantitative peptide and protein profiling by mass spectrometry.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Quantitative profiling of proteins in complex mixtures using liquid chromatography and mass spectrometry.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Identification and relative quantitation of protein mixtures by enzymatic digestion followed by capillary reversed-phase liquid chromatography-tandem mass spectrometry

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Quantification of proteins by label-free LC-MS/MS.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

An automated multidimensional protein identification technology for shotgun proteomics

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Role of spectral counting in quantitative proteomics.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Less label, more free: approaches in label-free quantitative mass spectrometry.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Quantitation in mass-spectrometry-based proteomics

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

A comparison of labeling and label-free mass spectrometry-based proteomics approaches.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Comparison of spectral counting and metabolic stable isotope labeling for use with quantitative microbial proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Characterization of global yeast quantitative proteome data generated from the wild-type and glucose repression saccharomyces cerevisiae strains: the comparison of two quantitative methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Direct comparison of stable isotope labeling by amino acids in cell culture and spectral counting for quantitative proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Isotope coded protein label quantification of serum proteins--comparison with the label-free LC-MS and validation using the MRM approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Comparison of label-free methods for quantifying human proteins by shotgun proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Profiling of mouse synaptosome proteome and phosphoproteome by IEF.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Purification and characterization of rat hippocampal CA3-dendritic spines associated with mossy fiber terminals.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Comparison of strong cation exchange and SDS-PAGE fractionation for analysis of multiprotein complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Combination of affinity depletion of abundant proteins and reversed-phase fractionation in proteomic analysis of human plasma/serum.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

High-abundance polypeptides of the human plasma proteome comprising the top 4 logs of polypeptide abundance

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

On the development of plasma protein biomarkers

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

High-abundance proteins depletion for serum proteomic analysis: concomitant removal of non-targeted proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Proteomics of human cerebrospinal fluid: discovery and verification of biomarker candidates in neurodegenerative diseases using quantitative proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Statistical issues in quality control of proteomic analyses: good experimental design and planning

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Design and analysis issues in quantitative proteomics studies

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

The role of statistical power analysis in quantitative proteomics

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

On the utility of pooling biological samples in microarray experiments

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

QuantiSpec--Quantitative mass spectrometry data analysis of (15)N-metabolically labeled proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

ProRata: A quantitative proteomics program for accurate protein abundance ratio estimation with confidence interval evaluation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Optimizing identification and quantitation of 15N-labeled proteins in comparative proteomics

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

A MS data search method for improved 15N-labeled protein identification

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

XDIA: improving on the label-free data-independent analysis

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Database-independent, database-dependent, and extended interpretation of peptide mass spectra in VEMS V2.0.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Experimental and computational approaches to quantitative proteomics: status quo and outlook

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Quantification of proteins using data-independent analysis (MSE) in simple andcomplex samples: a systematic evaluation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Prediction of error associated with false-positive rate determination for peptide identification in large-scale proteomics experiments using a combined reverse and forward peptide sequence database strategy

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Bioinformatics analysis of mass spectrometry-based proteomics data sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Quantitative, high-resolution proteomics for data-driven systems biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Visualization of omics data for systems biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Methods and algorithms for relative quantitative proteomics by mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Multiplexed particle-based flow cytometric assays

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

High-throughput generation of selected reaction-monitoring assays for proteins and proteomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Basic design of MRM assays for peptide quantification.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Fast proteomic protocol for biomarker fingerprinting in cancerous cells.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Mass spectrometry mapping of epidermal growth factor receptor phosphorylation related to oncogenic mutations and tyrosine kinase inhibitor sensitivity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

A pipeline that integrates the discovery and verification of plasma protein biomarkers reveals candidate markers for cardiovascular disease.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

The need for phosphoproteomic approaches in psychiatric research.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Perspectives for imaging mass spectrometry in the proteomics landscape

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Whole proteomes as internal standards in quantitative proteomics

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Quantitative proteomic analysis of primary neurons reveals diverse changes in synaptic protein content in fmr1 knockout mice

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Stable isotopic labeling by amino acids in cultured primary neurons: application to brain-derived neurotrophic factor-dependent phosphotyrosine-associated signaling

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Identification and quantification of preterm birth biomarkers in human cervicovaginal fluid by liquid chromatography/tandem mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Prefractionation techniques in proteome analysis: the mining tools of the third millennium

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

AKAP signaling in reinstated cocaine seeking revealed by iTRAQ proteomic analysis

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

iTRAQ analysis of complex proteome alterations in 3xTgAD Alzheimer's mice: understanding the interface between physiology and disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Changes in molecular composition of rat medial prefrontal cortex synapses during adolescent development

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100350

Quantitative iTRAQ analysis of retinal ganglion cell degeneration after optic nerve crush

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Quantitative phosphoproteomic analysis of neuronal intermediate filament proteins (NF-M/H) in Alzheimer's disease by iTRAQ

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Quantitative proteomics analysis of maternal plasma in Down syndrome pregnancies using isobaric tagging reagent (iTRAQ)

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Proteome analysis of the thalamus and cerebrospinal fluid reveals glycolysis dysfunction and potential biomarkers candidates for schizophrenia

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Relative and absolute quantification of postsynaptic density proteome isolated from rat forebrain and cerebellum.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Morphine administration alters the profile of hippocampal postsynaptic density-associated proteins: a proteomics study focusing on endocytic proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Quantitative proteomic analysis of mitochondrial proteins: relevance to Lewy body formation and Parkinson's disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Systematic uncovering of multiple pathways underlying the pathology of Huntington disease by an acid-cleavable isotope-coded affinity tag approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Alterations in oligodendrocyte proteins, calcium homeostasis and new potential markers in schizophrenia anterior temporal lobe are revealed by shotgun proteome analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Prefrontal cortex shotgun proteome analysis reveals altered calcium homeostasis and immune system imbalance in schizophrenia

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Identification of glyoxalase-I as a protein marker in a mouse model of extremes in trait anxiety.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Differential expression of proteins in fetal brains of alcohol-treated prenatally C57BL/6 mice: a proteomic investigation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Antipsychotic treatment alters protein expression associated with presynaptic function and nervous system development in rat frontal cortex.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Functional genomic and proteomic analysis reveals disruption of myelin-related genes and translation in a mouse model of early life neglect

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Proteomic analysis of rat striatal synaptosomes during acrylamide intoxication at a low dose rate

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Quantifying raft proteins in neonatal mouse brain by 'tube-gel' protein digestion label-free shotgun proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Proteomic profiling of proliferating and differentiated neural mes-c-myc A1 cell line from mouse embryonic mesencephalon by LC-MS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Differential analysis of membrane proteins in mouse fore- and hindbrain using a label-free approach.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Protein profiling reveals inter-individual protein homogeneity of arachnoid cyst fluid and high qualitative similarity to cerebrospinal fluid

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Expression profiling of fibroblasts identifies cell cycle abnormalities in schizophrenia

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Peripheral profiling analysis for bipolar disorder reveals markers associated with reduced cell survival.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

Global proteomic profiling reveals altered proteomic signature in schizophrenia serum.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100350

21 January 2018

Identifiers

DOI

10.1002/PMIC.201100350

1 reference

26 August 2017

1 reference

PubMed ID

22247077