OrthoClust: an orthology-based network framework for clustering data across multiple species (Q30854754)

12 October 2017

OrthoClust: an orthology-based network framework for clustering data across multiple species (English)

1 reference

12 October 2017

3

1 reference

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3 June 2020

Mark Bender Gerstein

6

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3 June 2020

author name string

Koon-Kiu Yan

1

1 reference

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3 June 2020

Daifeng Wang

2

1 reference

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3 June 2020

Henry Zheng

4

1 reference

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3 June 2020

Chao Cheng

5

1 reference

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3 June 2020

publication date

28 August 2014

1 reference

12 October 2017

1 reference

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3 June 2020

volume

15

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3 June 2020

issue

8

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3 June 2020

page(s)

R100

1 reference

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https://scigraph.springernature.com/pub.10.1186/gb-2014-15-8-r100

3 June 2020

exact match

0 references

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14 July 2018

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14 July 2018

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Spatio-temporal transcriptome of the human brain

14 July 2018

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REVIGO summarizes and visualizes long lists of gene ontology terms

14 July 2018

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Integrative analysis of many weighted co-expression networks using tensor computation

14 July 2018

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Measuring the evolutionary rewiring of biological networks

14 July 2018

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Large-scale prediction of long non-coding RNA functions in a coding-non-coding gene co-expression network

14 July 2018

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Community structure in time-dependent, multiscale, and multiplex networks

14 July 2018

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Getting started in gene orthology and functional analysis

14 July 2018

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A general co-expression network-based approach to gene expression analysis: comparison and applications

14 July 2018

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WormBase: a comprehensive resource for nematode research

14 July 2018

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Arabidopsis gene co-expression network and its functional modules.

14 July 2018

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Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

14 July 2018

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WGCNA: an R package for weighted correlation network analysis

14 July 2018

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RNA-Seq: a revolutionary tool for transcriptomics

14 July 2018

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Global alignment of multiple protein interaction networks with application to functional orthology detection

14 July 2018

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Gene Ontology term overlap as a measure of gene functional similarity

14 July 2018

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

14 July 2018

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14 July 2018

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The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists

14 July 2018

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A transversal approach to predict gene product networks from ontology-based similarity

14 July 2018

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Total ancestry measure: quantifying the similarity in tree-like classification, with genomic applications

14 July 2018

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Resolution limit in community detection

14 July 2018

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Evaluation of clustering algorithms for protein-protein interaction networks

14 July 2018

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Cross-species analysis of biological networks by Bayesian alignment

14 July 2018

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Modularity and community structure in networks

14 July 2018

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Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function

14 July 2018

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Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs

14 July 2018

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The yeast coexpression network has a small-world, scale-free architecture and can be explained by a simple model

14 July 2018

1 reference

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Conserved pathways within bacteria and yeast as revealed by global protein network alignment

14 July 2018

1 reference

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A gene-coexpression network for global discovery of conserved genetic modules

14 July 2018

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Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation

14 July 2018

1 reference

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Spectral biclustering of microarray data: coclustering genes and conditions

14 July 2018

1 reference

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Transitive functional annotation by shortest-path analysis of gene expression data

14 July 2018

1 reference

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Specificity and stability in topology of protein networks

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4289247

Random graphs with arbitrary degree distributions and their applications

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4289247

From molecular to modular cell biology

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4289247

Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4289247

Cluster analysis and display of genome-wide expression patterns

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4289247

Community detection in networks with positive and negative links.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4289247

Detecting fuzzy community structures in complex networks with a Potts model.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4289247

Analysis of weighted networks.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4289247

Biological networks: the tinkerer as an engineer.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4289247

Potts Ferromagnets on Coexpressed Gene Networks: Identifying Maximally Stable Partitions

25 November 2018

1 reference

12 December 2020

Gene coexpression network alignment and conservation of gene modules between two grass species: maize and rice

1 reference

12 December 2020

Conservation and coevolution in the scale-free human gene coexpression network

1 reference

12 December 2020

Guilt-by-association goes global

1 reference

12 December 2020

10.1186/GB-2014-15-8-R100

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25249401%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

3 June 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25249401%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25249401%20AND%20SRC:MED&resulttype=core&format=json