Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs (Q28264442)

10

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Nicolas Bertin

object named as

Nicolas Bertin

7

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Yu Xia

object named as

Yu Xia

5

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Marc Vidal

9

object named as

Marc Vidal

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author name string

Haiyuan Yu

1

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Nicholas M Luscombe

2

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Hao Xin Lu

3

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Xiaowei Zhu

4

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Jing-Dong J Han

6

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Sambath Chung

A protein interaction map of Drosophila melanogaster

8

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language of work or name

English

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publication date

June 2004

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published in

Genome Research

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volume

14

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page(s)

1107-18

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issue

6

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cites work

1 reference

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20 March 2017

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A genomic perspective on protein families

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Yeast HAP2 and HAP3: transcriptional activators in a heteromeric complex

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A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic Data

20 March 2017

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A map of the interactome network of the metazoan C. elegans

7 April 2017

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Comparative assessment of large-scale data sets of protein-protein interactions

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7 April 2017

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Subcellular localization of the yeast proteome

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Ontologies for proteomics: towards a systematic definition of structure and function that scales to the genome level

29 September 2017

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Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or "interologs".

29 September 2017

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Annotation transfer for genomics: measuring functional divergence in multi-domain proteins

29 September 2017

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A protein-protein interaction map of the Caenorhabditis elegans 26S proteasome

29 September 2017

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The TRANSFAC system on gene expression regulation.

29 September 2017

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Signal transduction by MAP kinase cascades in budding yeast

29 September 2017

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Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships

29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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Characterization of two Drosophila melanogaster cytochrome c genes and their transcripts

29 September 2017

1 reference

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Protein translocation channels in the proteasome and other proteases

29 September 2017

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Yeast HAP2 and HAP3 activators both bind to the CYC1 upstream activation site, UAS2, in an interdependent manner

2 June 2018

1 reference

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Protein-DNA interactions: amino acid conservation and the effects of mutations on binding specificity.

2 June 2018

1 reference

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Combined functional genomic maps of the C. elegans DNA damage response

27 November 2018

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The FlyBase database of the Drosophila genome projects and community literature.

27 November 2018

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Assessing annotation transfer for genomics: quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=419789

Errors in genome annotation

27 November 2018

1 reference

12 December 2020

Protein complexes take the bait

1 reference

12 December 2020

Bridging structural biology and genomics: assessing protein interaction data with known complexes

1 reference

12 December 2020

The evolution of protein structures

1 reference

12 December 2020

Identifiers

DOI

10.1101/GR.1774904

1 reference

2027613

2027613

1 reference

1 reference

1 reference