Allelic imbalance metre (Allim), a new tool for measuring allele-specific gene expression with RNA-seq data. (Q30619762)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23615333%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

title

Allelic imbalance metre (Allim), a new tool for measuring allele-specific gene expression with RNA-seq data (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23615333%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

1 reference

1 reference

2

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29 February 2020

Andreas Futschik

series ordinal

3

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23615333%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Christian Schlötterer

series ordinal

4

object named as

Christian Schlötterer

1 reference

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29 February 2020

author name string

Ram Vinay Pandey

series ordinal

1

1 reference

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29 February 2020

publication date

25 April 2013

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Molecular Ecology Resources

29 February 2020

published in

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29 February 2020

volume

13

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29 February 2020

issue

4

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29 February 2020

page(s)

740-745

1 reference

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describes a project that uses

29 February 2020

1 reference

A powerful and flexible statistical framework for testing hypotheses of allele-specific gene expression from RNA-seq data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3739924

AlleleSeq: analysis of allele-specific expression and binding in a network framework

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3739924

Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM).

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3739924

Computational methods for transcriptome annotation and quantification using RNA-seq

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3739924

Identification of transcriptome SNPs between Xiphophorus lines and species for assessing allele specific gene expression within F₁ interspecies hybrids

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3739924

Haplotype and isoform specific expression estimation using multi-mapping RNA-seq reads.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3739924

PoPoolation: a toolbox for population genetic analysis of next generation sequencing data from pooled individuals

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3739924

RNA sequencing: advances, challenges and opportunities

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3739924

Inferring combined CNV/SNP haplotypes from genotype data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3739924

A scaling normalization method for differential expression analysis of RNA-seq data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3739924

Fast and SNP-tolerant detection of complex variants and splicing in short reads

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3739924

Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3739924

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3739924

Quantitative monitoring of gene expression patterns with a complementary DNA microarray

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3739924

Allelic imbalance in Drosophila hybrid heads: exons, isoforms, and evolution

28 July 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12110

Evaluation of different reference based annotation strategies using RNA-Seq - a case study in Drososphila pseudoobscura

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12110

A new strategy to reduce allelic bias in RNA-Seq readmapping

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12110

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12110

21 January 2018

Identifiers

DOI

10.1111/1755-0998.12110

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23615333%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23615333%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23615333%20AND%20SRC:MED&resulttype=core&format=json