TinkerCell: modular CAD tool for synthetic biology (Q30491644)

20 August 2017

TinkerCell: modular CAD tool for synthetic biology (English)

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20 August 2017

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Frank T Bergmann

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20 August 2017

Herbert M Sauro

3

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author name string

Deepak Chandran

series ordinal

1

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20 August 2017

29 October 2009

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Journal of biological engineering

20 August 2017

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20 August 2017

3

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20 August 2017

19

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https://scigraph.springernature.com/pub.10.1186/1754-1611-3-19

20 August 2017

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Antimony: a modular model definition language

20 June 2018

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A synthetic genetic edge detection program.

20 June 2018

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The second wave of synthetic biology: from modules to systems

20 June 2018

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Measuring the activity of BioBrick promoters using an in vivo reference standard

20 June 2018

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A tunable synthetic mammalian oscillator

20 June 2018

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PROMOT: modular modeling for systems biology

20 June 2018

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Design and implementation of three incoherent feed-forward motif based biological concentration sensors

20 June 2018

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Metabolic engineering of microorganisms for biofuels production: from bugs to synthetic biology to fuels

20 June 2018

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Programming with models: modularity and abstraction provide powerful capabilities for systems biology

20 June 2018

1 reference

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Engineering BioBrick vectors from BioBrick parts

20 June 2018

1 reference

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Modular cell biology: retroactivity and insulation

20 June 2018

1 reference

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RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation.

20 June 2018

1 reference

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TABASCO: A single molecule, base-pair resolved gene expression simulator

20 June 2018

1 reference

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Synthetic biology--putting engineering into biology

20 June 2018

1 reference

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Environmentally controlled invasion of cancer cells by engineered bacteria

20 June 2018

1 reference

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Foundations for engineering biology

20 June 2018

1 reference

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Gene regulatory networks for development

20 June 2018

1 reference

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Modelling cellular systems with PySCeS.

20 June 2018

1 reference

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BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular domains

20 June 2018

1 reference

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CellML: its future, present and past

20 June 2018

1 reference

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Next generation simulation tools: the Systems Biology Workbench and BioSPICE integration

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776589

Prediction and measurement of an autoregulatory genetic module

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776589

Modular modeling of cellular systems with ProMoT/Diva

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776589

Designer gene networks: Towards fundamental cellular control.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776589

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776589

Construction of a genetic toggle switch in Escherichia coli

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776589

A synthetic oscillatory network of transcriptional regulators

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776589

A fast, robust and tunable synthetic gene oscillator.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776589

SynBioSS: the synthetic biology modeling suite

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776589

Computational design of synthetic gene circuits with composable parts

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776589

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776589

Multistability in the lactose utilization network of Escherichia coli

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776589

The OR control system of bacteriophage lambda. A physical-chemical model for gene regulation

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19874625

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1754-1611-3-19

1 reference

PMCID

2776589

Dimensions Publication ID

20 August 2017

0 references

1 reference

20 August 2017

1 reference

PMCID

2776589