Accurate protein structure modeling using sparse NMR data and homologous structure information (Q30417560)

11 August 2017

Accurate protein structure modeling using sparse NMR data and homologous structure information (English)

1 reference

11 August 2017

7

0 references

Jeffrey L Mills

object named as

Jeffrey L Mills

6

0 references

David Baker

object named as

David Baker

9

0 references

Gaetano T. Montelione

8

object named as

Gaetano T Montelione

1 reference

11 August 2017

4

Paolo Rossi

1 reference

11 August 2017

James M Thompson

1

1 reference

11 August 2017

Nikolaos G Sgourakis

2

1 reference

11 August 2017

Gaohua Liu

3

1 reference

11 August 2017

Yuefeng Tang

5

1 reference

11 August 2017

language of work or name

English

0 references

publication date

4 June 2012

1 reference

Proceedings of the National Academy of Sciences of the United States of America

11 August 2017

1 reference

11 August 2017

109

1 reference

11 August 2017

25

1 reference

11 August 2017

9875-9880

1 reference

Blind testing of routine, fully automated determination of protein structures from NMR data

11 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3382498

Solid-state NMR of proteins sedimented by ultracentrifugation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3382498

Incorporation of evolutionary information into Rosetta comparative modeling

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3382498

Determination of the structures of symmetric protein oligomers from NMR chemical shifts and residual dipolar couplings

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3382498

NMR structure determination for larger proteins using backbone-only data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3382498

Phasercrystallographic software

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3382498

Comparative protein structure modeling using MODELLER

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3382498

Consistent blind protein structure generation from NMR chemical shift data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3382498

A large data set comparison of protein structures determined by crystallography and NMR: statistical test for structural differences and the effect of crystal packing.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3382498

Protein structure determination from NMR chemical shifts

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3382498

The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native state ensembles of proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3382498

A general method for the unbiased improvement of solution NMR structures by the use of related X-ray data, the AUREMOL-ISIC algorithm

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3382498

Optimal isotope labelling for NMR protein structure determinations.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3382498

A topology-constrained distance network algorithm for protein structure determination from NOESY data.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3382498

Toward high-resolution de novo structure prediction for small proteins.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3382498

The 1.9 A structure of a proteasome-11S activator complex and implications for proteasome-PAN/PA700 interactions.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3382498

TM-align: a protein structure alignment algorithm based on the TM-score

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3382498

Protein NMR recall, precision, and F-measure scores (RPF scores): structure quality assessment measures based on information retrieval statistics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3382498

Rapid protein fold determination using unassigned NMR data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3382498

NMR analysis of a 900K GroEL GroES complex

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3382498

Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3382498

CLOUDS, a protocol for deriving a molecular proton density via NMR.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3382498

Chemical ligation of folded recombinant proteins: segmental isotopic labeling of domains for NMR studies

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3382498

Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3382498

Solution NMR spectroscopy beyond 25 kDa.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3382498

Comparative protein modelling by satisfaction of spatial restraints

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3382498

Time-averaged nuclear Overhauser effect distance restraints applied to tendamistat

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3382498

Inferential structure determination.

20 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1202485109

Homology modeling of an RNP domain from a human RNA-binding protein: Homology-constrained energy optimization provides a criterion for distinguishing potential sequence alignments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1202485109

Conformational Variability of Solution Nucelar Magnetic Resonance Structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1202485109

Exclusively NOESY-based automated NMR assignment and structure determination of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1202485109

Four-dimensional heteronuclear triple-resonance NMR spectroscopy of interleukin-1 beta in solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1202485109

A robust and cost-effective method for the production of Val, Leu, Ile (delta 1) methyl-protonated 15N-, 13C-, 2H-labeled proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1202485109

Disorder-order folding transitions underlie catalysis in the helicase motor of SecA

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1202485109

Quantitative dynamics and binding studies of the 20S proteasome by NMR

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1202485109

Assessing precision and accuracy of protein structures derived from NMR data

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22665781

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1202485109

1 reference

11 August 2017

0 references

1 reference

11 August 2017

1 reference