Rapid protein fold determination using unassigned NMR data (Q30885931)

20 September 2017

Rapid protein fold determination using unassigned NMR data (English)

1 reference

20 September 2017

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1

1 reference

27 June 2017

David Baker

2

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PMCID

307580

20 September 2017

language of work or name

English

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publication date

10 December 2003

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Proceedings of the National Academy of Sciences of the United States of America

20 September 2017

6

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based on heuristic

inferred from page(s)

published in

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20 September 2017

100

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20 September 2017

15404-15409

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20 September 2017

26

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Rosetta predictions in CASP5: successes, failures, and prospects for complete automation.

20 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307580

The NMR structure of the sensory domain of the membranous two-component fumarate sensor (histidine protein kinase) DcuS of Escherichia coli

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307580

PROSHIFT: Protein chemical shift prediction using artificial neural networks

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307580

Assignment strategy for proteins with known structure.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307580

Protein structure elucidation from NMR proton densities.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307580

CLOUDS, a protocol for deriving a molecular proton density via NMR.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307580

De novo determination of protein backbone structure from residual dipolar couplings using Rosetta

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307580

Nuclear magnetic resonance in the era of structural genomics

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307580

Automated assignment of ambiguous nuclear overhauser effects with ARIA

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307580

De novo protein structure determination using sparse NMR data.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307580

Solution structure of DinI provides insight into its mode of RecA inactivation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307580

Structure of the GAF domain, a ubiquitous signaling motif and a new class of cyclic GMP receptor

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307580

De novo determination of protein structure by NMR using orientational and long-range order restraints

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307580

Automated analysis of NMR assignments and structures for proteins.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307580

Protein secondary structure prediction based on position-specific scoring matrices

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307580

Solution structure of human GAIP (Galpha interacting protein): a regulator of G protein signaling

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307580

High precision solution structure of the C-terminal KH domain of heterogeneous nuclear ribonucleoprotein K, a c-myc transcription factor

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307580

Order matrix analysis of residual dipolar couplings using singular value decomposition.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307580

The use of dipolar couplings for determining the solution structure of rat apo-S100B(ββ)

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307580

Solution structure of the cellular factor BAF responsible for protecting retroviral DNA from autointegration

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307580

Solution structure of cyanovirin-N, a potent HIV-inactivating protein

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307580

A robust method for determining the magnitude of the fully asymmetric alignment tensor of oriented macromolecules in the absence of structural information.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307580

Direct measurement of distances and angles in biomolecules by NMR in a dilute liquid crystalline medium

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307580

Automated analysis of protein NMR assignments using methods from artificial intelligence.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307580

Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307580

Improved prediction of protein secondary structure by use of sequence profiles and neural networks

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307580

The 13C chemical-shift index: a simple method for the identification of protein secondary structure using 13C chemical-shift data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307580

Automated assignment of multidimensional nuclear magnetic resonance spectra.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307580

Nuclear magnetic dipole interactions in field-oriented proteins: information for structure determination in solution

14 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307580

14 July 2018

https://api.crossref.org/works/10.1073%2FPNAS.2434121100

A novel, highly stable fold of the immunoglobulin binding domain of streptococcal protein G

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307580

The chemical shift index: a fast and simple method for the assignment of protein secondary structure through NMR spectroscopy

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307580

Direct measurement of angles between bond vectors in high-resolution NMR.

14 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2434121100

Rosetta in CASP4: progress in ab initio protein structure prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2434121100

RFAC, a program for automated NMR R-factor estimation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2434121100

A new approach for applying residual dipolar couplings as restraints in structure elucidation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2434121100

DipoCoup: A versatile program for 3D-structure homology comparison based on residual dipolar couplings and pseudocontact shifts.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2434121100

Site- and time-specific gene targeting in the mouse

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2434121100

De Novo Prediction of Three-dimensional Structures for Major Protein Families

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2434121100

Validation of Protein Structure from Anisotropic Carbonyl Chemical Shifts in a Dilute Liquid Crystalline Phase

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2434121100

Heteronuclear multidimensional NMR experiments for the structure determination of proteins in solution employing pulsed field gradients

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2434121100

Improving the Packing and Accuracy of NMR Structures with a Pseudopotential for the Radius of Gyration

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2434121100

21 January 2018

Identifiers

DOI

10.1073/PNAS.2434121100

1 reference

20 September 2017

0 references

1 reference

20 September 2017

1 reference

PMCID

307580