Comparative transcriptome analyses reveal core parasitism genes and suggest gene duplication and repurposing as sources of structural novelty. (Q30301080)

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English	Comparative transcriptome analyses reveal core parasitism genes and suggest gene duplication and repurposing as sources of structural novelty.	scientific article

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26 February 2020

Comparative transcriptome analyses reveal core parasitism genes and suggest gene duplication and repurposing as sources of structural novelty (English)

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26 February 2020

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gene duplication

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based on heuristic

inferred from title

evolutionary novelty

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based on heuristic

inferred from title

3

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26 February 2020

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26 February 2020

Monica Fernandez-Aparicio

6

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26 February 2020

Claude W dePamphilis

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Claude W dePamphilis

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26 February 2020

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Zhenzhen Yang

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Eric K Wafula

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26 February 2020

Huiting Zhang

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26 February 2020

Kan Huang

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Pradeepa C G Bandaranayake

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Biao Wu

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Joshua P Der

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26 February 2020

Christopher R Clarke

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Paula E Ralph

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Lena Landherr

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26 February 2020

Naomi S Altman

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26 February 2020

John I Yoder

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26 February 2020

James H Westwood

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Michael P Timko

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publication date

21 December 2014

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26 February 2020

Molecular Biology and Evolution

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767-790

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3

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Creative Commons Attribution-NonCommercial 4.0 International

4 October 2016

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A new retroelement constituted by a natural alternatively spliced RNA of murine replication-competent retroviruses.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327159

3 June 2018

Gag proteins of the two Drosophila telomeric retrotransposons are targeted to chromosome ends

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327159

3 June 2018

Pectate lyases, cell wall degradation and fruit softening

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327159

3 June 2018

Identification, analysis, and utilization of conserved ortholog set markers for comparative genomics in higher plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327159

3 June 2018

Transcriptional responses in the hemiparasitic plant Triphysaria versicolor to host plant signals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327159

3 June 2018

Disintegration of the scrophulariaceae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327159

3 June 2018

Polyploid Incidence and Evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327159

3 June 2018

The evolutionary fate and consequences of duplicate genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327159

3 June 2018

Gene ontology: tool for the unification of biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327159

3 June 2018

ESTScan: a program for detecting, evaluating, and reconstructing potential coding regions in EST sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327159

3 June 2018

Preservation of duplicate genes by complementary, degenerative mutations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327159

3 June 2018

Explosive invasion of plant mitochondria by a group I intron

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327159

3 June 2018

PAML: a program package for phylogenetic analysis by maximum likelihood

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327159

3 June 2018

Oxidative damage during aging targets mitochondrial aconitase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327159

3 June 2018

Homing endonucleases: keeping the house in order

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327159

3 June 2018

Evolution of plastid gene rps2 in a lineage of hemiparasitic and holoparasitic plants: many losses of photosynthesis and complex patterns of rate variation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327159

3 June 2018

Conserved catalytic machinery and the prediction of a common fold for several families of glycosyl hydrolases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327159

3 June 2018

Fungal origin by horizontal transfer of a plant mitochondrial group I intron in the chimeric CoxI gene of Peperomia.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327159

3 June 2018

Evidence for horizontal transmission of the P transposable element between Drosophila species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327159

3 June 2018

Interspecific RNA interference of SHOOT MERISTEMLESS-like disrupts Cuscuta pentagona plant parasitism.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU343

21 January 2018

Movement of protein and macromolecules between host plants and the parasitic weed Phelipanche aegyptiaca Pers.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU343

21 January 2018

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU343

21 January 2018

Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU343

21 January 2018

A single-electron reducing quinone oxidoreductase is necessary to induce haustorium development in the root parasitic plant Triphysaria.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU343

21 January 2018

The TvPirin gene is necessary for haustorium development in the parasitic plant Triphysaria versicolor

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU343

21 January 2018

Trans-specific gene silencing of acetyl-CoA carboxylase in a root-parasitic plant

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU343

21 January 2018

Hemoglobin-degrading, aspartic proteases of blood-feeding parasites: substrate specificity revealed by homology models.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU343

21 January 2018

Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. What is the role of genome duplication in the evolution of complexity and diversity?

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU343

21 January 2018

Bacterial endopectate lyase: evidence that plant cell wall pH prevents tissue maceration and increases the half-life of elicitor-active oligogalacturonides

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU343

21 January 2018

How Striga Parasitizes its Host: a TEM and SEM Study

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU343

21 January 2018

Confidence Limits on Phylogenies: an Approach using the Bootstrap

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU343

21 January 2018

Application of qRT-PCR and RNA-Seq analysis for the identification of housekeeping genes useful for normalization of gene expression values during Striga hermonthica development.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU343

21 January 2018

Comprehensive comparison of auxin-regulated and brassinosteroid-regulated genes in Arabidopsis

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU343

21 January 2018

A peroxidase contributes to ROS production during Arabidopsis root response to potassium deficiency.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU343

21 January 2018

A novel cold-inducible gene from Arabidopsis, RCI3, encodes a peroxidase that constitutes a component for stress tolerance

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU343

21 January 2018

InterPro protein classification.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU343

21 January 2018

Phylogeny and origins of holoparasitism in Orobanchaceae

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU343

21 January 2018

Characterization of nitrogen relationships between Sorghum bicolor and the root-hemiparasitic angiosperm Striga hermonthica (Del.) Benth. using K15 NO3 as isotopic tracer.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU343

21 January 2018

Phylogeny of Lamiidae.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU343

21 January 2018

Mining EST databases to resolve evolutionary events in major crop species

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU343

21 January 2018

Phylogeny of holoparasitic Orobanche (Orobanchaceae) inferred from nuclear ITS sequences.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU343

21 January 2018

Pvclust: an R package for assessing the uncertainty in hierarchical clustering.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU343

21 January 2018

Cry j I, a major allergen of Japanese cedar pollen, has pectate lyase enzyme activity.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU343

21 January 2018

Inference of genome duplications from age distributions revisited.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU343

21 January 2018

Transcriptomes of the parasitic plant family Orobanchaceae reveal surprising conservation of chlorophyll synthesis

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU343

21 January 2018

The Evolution of Parasitism in Scrophulariaceae/Orobanchaceae: Plastid Gene Sequences Refute an Evolutionary Transition Series

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU343

21 January 2018

Reactive oxygen species signaling in response to pathogens

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU343

21 January 2018

Gene Duplication and Nucleotide Substitution in Evolution

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU343

21 January 2018

Possible significances of duplication in evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/25534030

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/25534030

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effect of Potassium Levels on the Stomatal Behavior of the Hemi-Parasite Striga hermonthica

1 reference

https://pubmed.ncbi.nlm.nih.gov/25534030

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genetic characterization of oligopeptide uptake systems in Sinorhizobium meliloti

1 reference

https://pubmed.ncbi.nlm.nih.gov/25534030

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Compatibility interactions at the cellular level provide the basis for host specificity in the parasitic plant Orobanche

1 reference

https://pubmed.ncbi.nlm.nih.gov/25534030

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The ectopic expression of a pectin methyl esterase inhibitor increases pectin methyl esterification and limits fungal diseases in wheat

1 reference

https://pubmed.ncbi.nlm.nih.gov/25534030

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Striga hermonthica MAX2 restores branching but not the Very Low Fluence Response in the Arabidopsis thaliana max2 mutant

1 reference

https://pubmed.ncbi.nlm.nih.gov/25534030

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/MOLBEV/MSU343

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25534030%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

release_6xbwth42ovbaxlo32hqnnou5oy

1 reference

https://api.fatcat.wiki/v0/release/6xbwth42ovbaxlo32hqnnou5oy

24 November 2022

based on heuristic

mapped directly with Wikidata item

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25534030%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25534030%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

ResearchGate publication ID

0 references

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