Homing endonucleases: keeping the house in order (Q24545192)

REBASE-restriction enzymes and methylases

Europe PubMed Central

title

Homing endonucleases: keeping the house in order (English)

0 references

M Belfort

1

M

Belfort

1 reference

24 October 2023

R J Roberts

2

R J

Roberts

1 reference

24 October 2023

language of work or name

English

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publication date

1 September 1997

0 references

published in

Nucleic Acids Research

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volume

25

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issue

17

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page(s)

3379-88

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cites work

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Crystal structure of PvuII endonuclease reveals extensive structural homologies to EcoRV

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Asymmetrical recognition and activity of the I-SceI endonuclease on its site and on intron-exon junctions

24 March 2017

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Maturase and endonuclease functions depend on separate conserved domains of the bifunctional protein encoded by the group I intron aI4 alpha of yeast mitochondrial DNA.

24 March 2017

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A site-specific endonuclease essential for mating-type switching in Saccharomyces cerevisiae

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Substrate recognition and induced DNA distortion by the PI-SceI endonuclease, an enzyme generated by protein splicing

24 March 2017

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Introns as mobile genetic elements

24 March 2017

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Multi-site-specific endonucleases and the initiation of homologous genetic recombination in yeast

24 March 2017

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A group II intron RNA is a catalytic component of a DNA endonuclease involved in intron mobility

24 March 2017

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Cloned restriction-modification systems--a review

24 March 2017

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Protein splicing converts the yeast TFP1 gene product to the 69-kD subunit of the vacuolar H(+)-adenosine triphosphatase

24 March 2017

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Molecular structure of a gene, VMA1, encoding the catalytic subunit of H(+)-translocating adenosine triphosphatase from vacuolar membranes of Saccharomyces cerevisiae

24 March 2017

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Purification and characterization of the SegA protein of bacteriophage T4, an endonuclease related to proteins encoded by group I introns

24 March 2017

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Recognition and cleavage of DNA by type-II restriction endonucleases

24 March 2017

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Compilation and analysis of intein sequences

27 September 2017

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Binding, bending and cleavage of DNA substrates by the homing endonuclease Pl-SceI.

27 September 2017

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Protein footprinting approach to mapping DNA binding sites of two archaeal homing enzymes: evidence for a two-domain protein structure.

27 September 2017

1 reference

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Repair of double-strand breaks in bacteriophage T4 by a mechanism that involves extensive DNA replication

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

Splicing of a group II intron in a functional transfer gene of Lactococcus lactis

27 September 2017

1 reference

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Highly plastic chromosomal organization in Salmonella typhi

27 September 2017

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Double strand break-induced recombination in Chlamydomonas reinhardtii chloroplasts

27 September 2017

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Homology requirements for double-strand break-mediated recombination in a phage lambda-td intron model system.

27 September 2017

1 reference

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A novel Ty1-mediated fragmentation method for native and artificial yeast chromosomes reveals that the mouse steel gene is a hotspot for Ty1 integration.

27 September 2017

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Double-strand break repair in the absence of RAD51 in yeast: a possible role for break-induced DNA replication

27 September 2017

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Efficient integration of an intron RNA into double-stranded DNA by reverse splicing

27 September 2017

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Effects of terminal nonhomology and homeology on double-strand-break-induced gene conversion tract directionality.

27 September 2017

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Two different but related mechanisms are used in plants for the repair of genomic double-strand breaks by homologous recombination

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

Stimulation of intrachromosomal homologous recombination in human cells by electroporation with site-specific endonucleases

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

Intercellular mobility and homing of an archaeal rDNA intron confers a selective advantage over intron- cells of Sulfolobus acidocaldarius

27 September 2017

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Beyond homing: competition between intron endonucleases confers a selective advantage on flanking genetic markers

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

Retrohoming: cDNA-mediated mobility of group II introns requires a catalytic RNA.

27 September 2017

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Substrate binding and turnover by the highly specific I-PpoI endonuclease.

27 September 2017

1 reference

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Mechanisms of intron mobility.

27 September 2017

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Intron-encoded endonuclease I-TevI binds as a monomer to effect sequential cleavage via conformational changes in the td homing site.

27 September 2017

1 reference

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The td intron endonuclease I-TevI makes extensive sequence-tolerant contacts across the minor groove of its DNA target

27 September 2017

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27 September 2017

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Analysis of the chloroplast large subunit ribosomal RNA gene from 17 Chlamydomonas taxa. Three internal transcribed spacers and 12 group I intron insertion sites

27 September 2017

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27 September 2017

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In vitro protein splicing of purified precursor and the identification of a branched intermediate

27 September 2017

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Interaction of the intron-encoded mobility endonuclease I-PpoI with its target site

27 September 2017

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Protein splicing elements: inteins and exteins--a definition of terms and recommended nomenclature

27 September 2017

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Structure of restriction endonuclease BamHI and its relationship to EcoRI.

27 September 2017

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27 September 2017

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Self-splicing group I and group II introns encode homologous (putative) DNA endonucleases of a new family

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

Substitutions in conserved dodecapeptide motifs that uncouple the DNA binding and DNA cleavage activities of PI-SceI endonuclease

27 September 2017

1 reference

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Selfish behavior of restriction-modification systems

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

Structure and function of restriction endonucleases

27 September 2017

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Construction of a complete genomic library of Saccharomyces cerevisiae and physical mapping of chromosome XI at 3.7 kb resolution

27 September 2017

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Evolutionary transfer of ORF-containing group I introns between different subcellular compartments (chloroplast and mitochondrion).

27 September 2017

1 reference

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I-CeuI recognition sites in the rrn operons of the Bacillus subtilis 168 chromosome: inherent landmarks for genome analysis

27 September 2017

1 reference

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27 September 2017

1 reference

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Internal structure of a mitochondrial intron of Aspergillus nidulans

27 September 2017

1 reference

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Evidence for translated intervening sequences in the mitochondrial genome of Saccharomyces cerevisiae

27 September 2017

1 reference

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Assembly of the mitochondrial membrane system. Structure and nucleotide sequence of the gene coding for subunit 1 of yeast cytochrme oxidase

27 September 2017

1 reference

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27 September 2017

1 reference

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The chloroplast ribosomal intron of Chlamydomonas reinhardii codes for a polypeptide related to mitochondrial maturases

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

Recognition and cleavage site of the intron-encoded omega transposase.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

A site-specific endonuclease and co-conversion of flanking exons associated with the mobile td intron of phage T4.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

Mobile introns: definition of terms and recommended nomenclature

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

Site-specific DNA endonuclease and RNA maturase activities of two homologous intron-encoded proteins from yeast mitochondria

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

The nucleotide sequence of the region of bacteriophage T4 inh(lip)-hoc genes

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

Characterization of I-Ppo, an intron-encoded endonuclease that mediates homing of a group I intron in the ribosomal DNA of Physarum polycephalum

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

A self-splicing group I intron in the DNA polymerase gene of Bacillus subtilis bacteriophage SPO1.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

The phage T4 nrdB intron: a deletion mutant of a version found in the wild

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

A group I intron in the chloroplast large subunit rRNA gene of Chlamydomonas eugametos encodes a double-strand endonuclease that cleaves the homing site of this intron

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

Cleavage pattern of the homing endonuclease encoded by the fifth intron in the chloroplast large subunit rRNA-encoding gene of Chlamydomonas eugametos

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

I-TevI, the endonuclease encoded by the mobile td intron, recognizes binding and cleavage domains on its DNA target

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

Six group I introns and three internal transcribed spacers in the chloroplast large subunit ribosomal RNA gene of the green alga Chlamydomonas eugametos

27 September 2017

1 reference

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A new specific DNA endonuclease activity in yeast mitochondria

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

Identification of a family of bacteriophage T4 genes encoding proteins similar to those present in group I introns of fungi and phage

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

Homing of a DNA endonuclease gene by meiotic gene conversion in Saccharomyces cerevisiae

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

A group I intron in the small subunit ribosomal RNA gene from Naegleria andersoni ssp. andersoni strain PPMFB-6

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

Protein splicing removes intervening sequences in an archaea DNA polymerase

27 September 2017

1 reference

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Protein-coding introns from the 23S rRNA-encoding gene form stable circles in the hyperthermophilic archaeon Pyrobaculum organotrophum

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

New ultrarare restriction site-carrying transposons for bacterial genomics.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

Retrotransposon reverse-transcriptase-mediated repair of chromosomal breaks.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

Amino acid sequence motif of group I intron endonucleases is conserved in open reading frames of group II introns

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

A new class of site-specific endodeoxyribonucleases. Endo.Sce I isolated from a eukaryote, Saccharomyces cerevisiae

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

Sequence of the intron and flanking exons of the mitochondrial 21S rRNA gene of yeast strains having different alleles at the ω and rib-1 loci

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

Universal code equivalent of a yeast mitochondrial intron reading frame is expressed into E. coli as a specific double strand endonuclease.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

The apocytochrome b gene of Chlamydomonas smithii contains a mobile intron related to both Saccharomyces and Neurospora introns

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

Cleavage and recognition pattern of a double-strand-specific endonuclease (I-creI) encoded by the chloroplast 23S rRNA intron of Chlamydomonas reinhardtii

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

Two homologous mitochondrial introns from closely related Saccharomyces species differ by only a few amino acid replacements in their Open Reading Frames: one is mobile, the other is not

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

The group I intron of apocytochrome b gene from Chlamydomonas smithii encodes a site-specific endonuclease

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

Structure analysis at the ends of the intervening DNA sequences in the chloroplast 23S ribosomal genes of C. reinhardii

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

Study of the organization of the genomes of Escherichia coli, Brucella melitensis and Agrobacterium tumefaciens by insertion of a unique restriction site.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

Modes of DNA cleavage by the EcoRV restriction endonuclease.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

Capture of retrotransposon DNA at the sites of chromosomal double-strand breaks

19 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

Exon coconversion biases accompanying intron homing: battle of the nucleases.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

Creation of a novel, versatile multiple cloning site cut by four rare-cutting homing endonucleases.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

Purification of Escherichia coli chromosomal segments without cloning.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

Characterization of the cleavage site and the recognition sequence of the I-CreI DNA endonuclease encoded by the chloroplast ribosomal intron of Chlamydomonas reinhardtii.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146926

DNA double-strand breaks and hairpins in V(D)J recombination

28 November 2018

1 reference

12 December 2020

Versatile cosmid vectors for facilitated analysis and subcloning of the insert

1 reference

12 December 2020

Two-domain structure of the td intron-encoded endonuclease I-TevI correlates with the two-domain configuration of the homing site

1 reference

12 December 2020

Ho endonuclease cleaves MAT DNA in vitro by an inefficient stoichiometric reaction mechanism

1 reference

12 December 2020

Mating-type gene switching in Saccharomyces cerevisiae

1 reference

12 December 2020

Site-specific endo-deoxyribonucleases in eukaryotes: endonucleases of yeasts, Saccharomyces and Pichia

1 reference

12 December 2020

Selection of a remote cleavage site by I-tevI, the td intron-encoded endonuclease

1 reference

12 December 2020

Group II intron mobility occurs by target DNA-primed reverse transcription

1 reference

12 December 2020

A mobile group I intron in the nuclear rDNA of Physarum polycephalum

1 reference

12 December 2020

Intron-encoded Endonuclease I-TevII Binds Across the Minor Groove and Induces Two Distinct Conformational Changes in its DNA Substrate

1 reference

12 December 2020

Intron mobility in phage T4 occurs in the context of recombination-dependent DNA replication by way of multiple pathways

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/25.17.3379

1 reference

release_z5y6bahzz5fmpgesxycjkzeejm

465681

Fatcat ID

0 references

465681

1 reference

1 reference

1 reference