The Role of Aromatic-Aromatic Interactions in Strand-Strand Stabilization of β-Sheets (Q30155071)

18 August 2017

The Role of Aromatic-Aromatic Interactions in Strand-Strand Stabilization of β-Sheets (English)

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18 August 2017

Anastasia Zhuravleva

2

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author name string

Ivan L Budyak

series ordinal

1

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18 August 2017

Lila M Gierasch

series ordinal

3

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18 August 2017

language of work or name

English

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publication date

28 June 2013

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Journal of Molecular Biology

18 August 2017

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18 August 2017

425

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18 August 2017

18

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18 August 2017

3522-3535

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Early folding events protect aggregation-prone regions of a β-rich protein

18 August 2017

1 reference

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GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit

3 June 2018

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Contributions of aromatic pairs to the folding and stability of long-lived human γD-crystallin

3 June 2018

1 reference

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Residual interactions in unfolded bile acid-binding protein by 19F NMR

3 June 2018

1 reference

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ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids

3 June 2018

1 reference

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An intramembrane aromatic network determines pentameric assembly of Cys-loop receptors

3 June 2018

1 reference

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New insights on the protein-ligand interaction differences between the two primary cellular retinol carriers

3 June 2018

1 reference

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PDBselect 1992-2009 and PDBfilter-select

3 June 2018

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Assessing the solvent-dependent surface area of unfolded proteins using an ensemble model

3 June 2018

1 reference

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Conformational and dynamics changes induced by bile acids binding to chicken liver bile acid binding protein

3 June 2018

1 reference

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On the role of structural class of a protein with two-state folding kinetics in determining correlations between its size, topology, and folding rate

3 June 2018

1 reference

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Structural and dynamic determinants of ligand binding in the ternary complex of chicken liver bile acid binding protein with two bile salts revealed by NMR

3 June 2018

1 reference

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Aromatic and cation-pi interactions enhance helix-helix association in a membrane environment

3 June 2018

1 reference

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Geometry of nonbonded interactions involving planar groups in proteins

3 June 2018

1 reference

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Observation of sequential steps in the folding of intestinal fatty acid binding protein using a slow folding mutant and 19F NMR.

3 June 2018

1 reference

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Assessing the role of aromatic residues in the amyloid aggregation of human muscle acylphosphatase

3 June 2018

1 reference

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The Yin and Yang of protein folding

3 June 2018

1 reference

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Buried hydrophobic side-chains essential for the folding of the parallel beta-helix domains of the P22 tailspike

3 June 2018

1 reference

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Sequence and structural analysis of cellular retinoic acid-binding proteins reveals a network of conserved hydrophobic interactions

3 June 2018

1 reference

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Analysis of accessible surface of residues in proteins

3 June 2018

1 reference

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Aromatic interactions in model systems

3 June 2018

1 reference

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Protein aggregation in disease: a role for folding intermediates forming specific multimeric interactions

3 June 2018

1 reference

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Selective aromatic interactions in beta-hairpin peptides

3 June 2018

1 reference

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MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

3 June 2018

1 reference

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A possible role for pi-stacking in the self-assembly of amyloid fibrils

3 June 2018

1 reference

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Tryptophan zippers: Stable, monomeric -hairpins

3 June 2018

1 reference

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Role of a solvent-exposed aromatic cluster in the folding of Escherichia coli CspA.

3 June 2018

1 reference

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Dynamics of cellular retinoic acid binding protein I on multiple time scales with implications for ligand binding

3 June 2018

1 reference

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A comparative study of the backbone dynamics of two closely related lipid binding proteins: bovine heart fatty acid binding protein and porcine ileal lipid binding protein.

3 June 2018

1 reference

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pi-Stacking interactions. Alive and well in proteins

3 June 2018

1 reference

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Contact order, transition state placement and the refolding rates of single domain proteins.

3 June 2018

1 reference

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Discrete backbone disorder in the nuclear magnetic resonance structure of apo intestinal fatty acid-binding protein: implications for the mechanism of ligand entry

3 June 2018

1 reference

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Denaturant m values and heat capacity changes: relation to changes in accessible surface areas of protein unfolding

3 June 2018

1 reference

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NMRPipe: a multidimensional spectral processing system based on UNIX pipes

3 June 2018

1 reference

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Application of physical organic chemistry to engineered mutants of proteins: Hammond postulate behavior in the transition state of protein folding

3 June 2018

1 reference

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Crystal structures of cellular retinoic acid binding proteins I and II in complex with all-trans-retinoic acid and a synthetic retinoid

3 June 2018

1 reference

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Crystal structure of cellular retinoic acid binding protein I shows increased access to the binding cavity due to formation of an intermolecular beta-sheet

3 June 2018

1 reference

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Aromatic-aromatic interaction: a mechanism of protein structure stabilization

3 June 2018

1 reference

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Determination and analysis of urea and guanidine hydrochloride denaturation curves

3 June 2018

1 reference

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The folding of an enzyme. I. Theory of protein engineering analysis of stability and pathway of protein folding

3 June 2018

1 reference

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Mutating the charged residues in the binding pocket of cellular retinoic acid-binding protein simultaneously reduces its binding affinity to retinoic acid and increases its thermostability

3 June 2018

1 reference

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Binding affinities of retinol and related compounds to retinol binding proteins

3 June 2018

1 reference

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Aromatic residues link binding and function of intrinsically disordered proteins

3 June 2018

1 reference

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A reexamination of the propensities of amino acids towards a particular secondary structure: classification of amino acids based on their chemical structure.

26 November 2018

1 reference

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NMR analysis of aromatic interactions in designed peptide beta-hairpins

26 November 2018

1 reference

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The absence of favorable aromatic interactions between beta-sheet peptides.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3778025

NMR studies of 4-19F-phenylalanine-labeled intestinal fatty acid binding protein: evidence for conformational heterogeneity in the native state

26 November 2018

1 reference

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Quantifying the roughness on the free energy landscape: entropic bottlenecks and protein folding rates

26 November 2018

1 reference

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Aromatic-aromatic interactions in crystal structures of helical peptide scaffolds containing projecting phenylalanine residues

26 November 2018

1 reference

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Evolution of the family of intracellular lipid binding proteins in vertebrates

26 November 2018

1 reference

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Aromatic side-chain interactions in proteins. I. Main structural features

26 November 2018

1 reference

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Contribution of aromatic interactions to alpha-helix stability

26 November 2018

1 reference

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Aromatic clusters: a determinant of thermal stability of thermophilic proteins

26 November 2018

1 reference

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Probing the folding pathway of a beta-clam protein with single-tryptophan constructs.

26 November 2018

1 reference

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Aromatic-aromatic interactions in proteins: beyond the dimer

26 November 2018

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12 December 2020

Modeling unfolded states of proteins and peptides. II. Backbone solvent accessibility

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12 December 2020

Cavity formation before stable hydrogen bonding in the folding of a β-clam protein

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12 December 2020

NMR analysis of cross strand aromatic interactions in an 8 residue hairpin and a 14 residue three stranded β-sheet peptide

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12 December 2020

Aromatic-aromatic interactions in and around alpha-helices

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12 December 2020

10.1016/J.JMB.2013.06.030

Identifiers

DOI

1 reference

18 August 2017

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18 August 2017

PubMed publication ID

23810905

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